 |
Job Description | P0AFR4 | Confidence | 12.86% | Date | Thu Jan 5 11:27:03 GMT 2012 |
Rank | 56 | Aligned Residues | 82 |
% Identity | 12% | Template | c3n0vD_ |
PDB info |
PDB header:hydrolase | Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; |
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
|
Resolution | 2.25 Å |
|
 |
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | I | G | M | R | V | P | S | N | P | I | A | Q | A | L | L | E | A | L | G | E | P | M | L | S | T | S | L | M | L | P | G | S | E | F | T | E | S | D | P | E | E | I | K | D | R | L | E | K | Q | V | D | L | I | I | H | G | G | Y | L | G | Q | K | P | T | T | V | I | D | L | T | D | D | T | P | V | V | V | R | E |
Query Conservation |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|   |   |
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . |   |
|
|
|
|
|
|   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
Template Sequence |   |
D | V | V | A | V | V | S | N | H | P | D | L | E | P | L | A | H | W | H | K | I | P | Y | Y | H | F | A | L | D | P | K | D | K | P | G | Q | E | R | K | V | L | Q | V | I | E | E | T | G | . |
. |
A | E | L | V | I | L | A | R | Y | X | Q | V | L | S | P | E | L | C | R | R | L | D | G | W | A | I | N | I | H | H |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | S | S | S | T | T |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
|
| B | T | T | B |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . |
| S |  |  |  |  | S | S |
|
| S |
|
|
|  |  |  |  |  |  | T | T | T | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | |
|
. | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . |
  |
  |   |
198 | . | 200 | . |
Predicted Secondary structure |   |
|
|
|
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
G | V | G | D |
Query Conservation |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|
|
|
|
Template Sequence |   |
S | L | L | P |
Template Known Secondary structure |   |
|
| S | T |
Template Predicted Secondary structure |   |
 |  |
|
|
Template SS confidence |   |
|
|
|
|
  |   |
196 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|