Job Description Q46799 Confidence 100.00% Date Thu Jan 5 12:34:21 GMT 2012 Rank 8 Aligned Residues 716 % Identity 27% Template c1vlbA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a Resolution 1.28 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		R	V	D	A	I	A	K	V	T	G	R	A	R	Y	T	D	D	Y	V	M	.	.	.	A	G	M	C	Y	A	K	Y	V	R	S	P	I	A	H	G	Y	A	V	S	I	N	D	E	Q	A	R	S	L	P	G	V	L	A	I	F	T	W	E	D	V	P	D	I	P	F	A	T	A	G	H	A	W	T	L	D	E
Query Conservation																						.	.	.
Alig confidence																						.	.	.																																																				.
Template Conservation																																																																												.
Template Sequence		R	P	T	A	V	A	K	V	T	G	T	L	D	Y	G	A	D	L	G	L	K	M	P	A	G	T	L	H	L	A	M	V	Q	A	K	V	S	H	A	N	I	K	G	I	D	T	S	E	A	L	T	M	P	G	V	H	S	V	I	T	H	K	D	V	K	G	K	N	R	I	T	G	L	I	.	T	F	P	T	N
Template Known Secondary structure			T	T						T	T		S									T	S		T	T										S	S	S	S													T	S	T	T							G	G	G			S		S					S	S	.			T	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		N	K	R	D	T	A	D	R	A	L	L	T	R	H	V	R	H	H	G	D	A	V	A	I	V	V	A	R	D	E	L	T	A	E	K	A	A	Q	L	V	S	I	E	W	Q	E	L	P	V	I	T	T	P	E	A	A	L	A	E	D	A	A	P	I	H	N	.	.	G	G	N	L	L	K	Q	S	T	M	S	T
Query Conservation																																																																				.	.
Alig confidence																																																																				.	.
Template Conservation
Template Sequence		K	G	D	G	W	D	R	P	I	L	C	D	E	K	V	F	Q	Y	G	D	C	I	A	L	V	C	A	D	S	E	A	N	A	R	A	A	A	E	K	V	K	V	D	L	E	E	L	P	A	Y	M	S	G	P	A	A	A	A	E	D	A	I	E	I	H	P	G	T	P	N	V	Y	F	E	Q	P	I	V	K	G
Template Known Secondary structure		S	S		S					S	S		S	S				S	T	T									S	S									T	T													S						S	T	T				S	S	T	T	S		S										S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	V	Q	Q	T	I	D	A	A	D	Y	Q	V	Q	G	H	Y	Q	T	P	V	I	Q	H	C	H	M	E	S	V	T	S	L	A	W	M	E	D	D	S	R	I	T	I	V	S	S	T	Q	I	P	H	I	V	R	R	V	V	G	Q	A	L	D	I	P	W	S	C	V	R	V	I	K	P	F	V	G	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	T	G	P	I	F	A	S	A	D	V	T	V	E	G	D	F	Y	V	G	R	Q	P	H	M	P	I	E	P	D	V	A	F	A	Y	M	G	D	D	G	K	C	Y	I	H	S	K	S	I	G	V	H	L	H	L	Y	M	I	A	P	G	V	G	L	E	P	D	Q	L	V	L	V	A	N	P	M	G	G	T
Template Known Secondary structure		S										S																	S	S										T	T	S							S		S														T			G	G	G									S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	N	K	Q	D	V	L	E	E	P	M	A	A	F	L	T	S	K	L	G	G	I	P	V	K	V	S	L	S	R	E	E	C	F	L	A	T	R	T	R	H	A	F	T	I	D	G	Q	M	G	V	N	R	D	G	T	L	K	G	Y	S	L	D	V	L	S	N	T	G	A	Y	A	S	H	G	H	S	I	A
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		F	G	Y	K	F	S	P	T	S	E	.	A	L	V	A	V	A	A	M	A	T	G	R	P	V	H	L	R	Y	N	Y	Q	Q	Q	Q	Q	Y	T	G	K	R	S	P	W	E	M	N	V	K	F	A	A	K	K	D	G	T	L	L	A	M	E	S	D	W	L	V	D	H	G	P	Y	S	E	F	G	D	L	L	T
Template Known Secondary structure		T	T	G	G	G	S		S	S		.											S	S														S	S		B														T	T															T	T			T	T
Template Predicted Secondary structure												.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	G	G	N	K	V	A	Y	L	Y	P	R	C	A	Y	A	Y	S	S	K	T	C	Y	T	N	L	P	S	A	G	A	M	R	G	Y	G	A	P	Q	V	V	F	A	V	E	S	M	L	D	D	A	A	T	A	L	G	I	D	P	V	E	I	R	L	R	N	A	A	R	E	G	D	A	N	P	L	T	G	K
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		L	R	G	A	Q	F	I	G	A	G	Y	N	I	P	N	I	R	G	L	G	R	T	V	A	T	N	H	V	W	G	S	A	F	R	G	Y	G	A	P	Q	S	M	F	A	S	E	C	L	M	D	M	L	A	E	K	L	G	M	D	P	L	E	L	R	Y	K	N	A	Y	R	P	G	D	T	N	P	T	.	G	Q
Template Known Secondary structure								T	T	T	T	B															S	S			B				T	T	T	T																				T											B			T	T				T	T	.	S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.		.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	Y	S	A	G	L	P	E	C	L	E	K	G	R	K	I	F	E	W	E	K	R	R	A	E	C	Q	N	Q	Q	G	N	L	R	R	G	V	G	V	A	C	F	S	Y	T	S	N	T	W	P	V	G	V	E	I	A	G	A	R	L	L	M	N	Q	D	G	T	I	N	V	Q	S	G	A	T	E	I	G	Q
Query Conservation
Alig confidence																									.																										.	.
Template Conservation																									.																										.	.
Template Sequence		E	P	E	V	F	S	L	P	D	M	I	D	Q	L	R	P	K	Y	Q	A	A	L	E	.	K	A	Q	K	E	S	T	A	T	H	K	K	G	V	G	I	S	I	G	V	Y	G	S	G	L	.	.	D	G	P	D	A	S	E	A	W	A	E	L	N	A	D	G	T	I	T	V	H	T	A	W	E	D	H	G	Q
Template Known Secondary structure				S																					.								S	S														S	S	S	.	.	T	T	T											T	T	S											S	S	S
Template Predicted Secondary structure																									.																										.	.
Template SS confidence
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.		.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.			.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490				.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		G	A	D	T	V	F	S	Q	M	V	A	E	T	V	.	.	.	G	V	P	V	S	D	V	R	V	I	S	T	Q	D	T	D	V	T	P	F	D	P	G	A	F	A	S	R	Q	S	Y	V	A	A	P	A	L	R	S	A	A	L	L	L	K	E	K	I	I	A	H	A	A	V	M	L	H	Q	S	A	M	N	L
Query Conservation																.	.	.
Alig confidence																.	.	.										.																																																.	.
Template Conservation																												.																																																.	.
Template Sequence		G	A	D	I	G	C	V	G	T	A	H	E	A	L	R	P	M	G	V	A	P	E	K	I	K	F	.	T	W	P	N	T	A	T	T	P	N	S	G	P	S	G	G	S	R	Q	Q	V	M	T	G	N	A	I	R	V	A	C	E	N	L	L	K	A	C	E	K	P	G	G	G	Y	Y	T	.	.	Y	D	E	L
Template Known Secondary structure																G	G	G	T			G	G	G				.				B	T	T	T	S						S		T	T																						B		T	T	S	S	B			.	.
Template Predicted Secondary structure																												.																																																.	.
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.		.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.			.	730	.	.
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	I	K	G	H	I	V	L	V	E	R	P	E	E	P	L	M	S	L	K	D	L	A	M	D	A	F	Y	H	P	E	R	G	G	Q	L	S	A	E	S	S	I	K	T	T	T	N	P	P	A	F	G	C	T	F	V	D	L	T	V	D	I	A	L	C	K	V	T	I	N	R	I	L	N	V	H	D	S	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	A	D	K	P	T	K	I	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	W	T	A	S	G	A	T	H	C	D	A	V	T	G	L	G	K	P	F	V	V	Y	M	Y	G	V	F	M	A	E	V	T	V	D	V	A	T	G	Q	T	T	V	D	G	M	T	L	M	A	D	L	G
Template Known Secondary structure				T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T		B				T	T	T			S	B			S															T	T	T															S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.																	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.		.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		H	I	L	N	P	L	L	A	E	G	Q	V	H	G	G	M	G	M	G	I	G	W	A	L	F	E	E	M	I	I	D	A	K	S	G	V	V	R	N	P	N	L	L	D	Y	K	M	P	T	M	P	D	L	P	Q	.	L	E	S	A	F	V	E	I	N	E	P	Q	S	A	Y	G	H	K	S	L	G	E	P	P
Query Conservation																																																									.
Alig confidence																																					.	.	.	.	.																.
Template Conservation																																					.	.	.	.	.
Template Sequence		S	L	C	N	Q	L	A	T	D	G	Q	I	Y	G	G	L	A	Q	G	I	G	L	A	L	S	E	D	F	E	D	I	K	K	H	A	.	.	.	.	.	T	L	V	G	A	G	F	P	F	I	K	Q	I	P	D	K	L	D	I	V	Y	V	N	H	P	R	P	D	G	P	F	G	A	S	G	V	G	E	L	P
Template Known Secondary structure		S		S																						T					S	T	T	T	S	S	.	.	.	.	.	S	T	T	T	T	T				G	G	G	S		S												T	T	S	G	G	G					T	T	G	G
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		797	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.						.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	P	V	A	A	A	I	R	N	A	V	K	M	A	T	G	V	A	I	N	T	L	P	L	T	P	K	R	L	Y	E	E	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	S	P	H	A	A	I	I	N	A	I	K	S	A	T	G	V	R	I	Y	R	L	P	A	Y	P	E	K	V	L	E	A	L	K
Template Known Secondary structure		G	S	S														S					B	S
Template Predicted Secondary structure
Template SS confidence
		872	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.