Job Description Q46799 Confidence 100.00% Date Thu Jan 5 12:34:21 GMT 2012 Rank 3 Aligned Residues 740 % Identity 26% Template c1n62E_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Resolution 1.09 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	D	A	I	A	K	V	T	G	R	A	R	Y	T	D	D	Y	V	M	A	G	M	C	Y	A	K	Y	V	R	S	P	I	A	H	G	Y	A	V	S	I	N	D	E	Q	A	R	S	L	P	G	V	L	A	I	F	T	W	E	D	V	P	D	I	P	F	A	T	A	G	H	A	W	T	L	D	E	N	K	R
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		R	V	E	D	I	R	F	T	Q	G	K	G	N	Y	V	D	D	V	K	L	P	G	M	L	F	G	D	F	V	R	S	S	H	A	H	A	R	I	K	S	I	D	T	S	K	A	K	A	L	P	G	V	F	A	V	L	T	A	A	D	L	K	P	L	N	L	H	Y	M	P	T	L	A	G	.	.	.	.	.	.
Template Known Secondary structure			T						T	T	T				B	G	G	G				T	T										S		S	S														S	T	T											G	G	G	T		S					T	T	S	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	A	D	R	A	L	L	T	R	H	V	R	H	H	G	D	A	V	A	I	V	V	A	R	D	E	L	T	A	E	K	A	A	Q	L	V	S	I	E	W	Q	E	L	P	V	I	T	T	P	E	A	A	L	A	E	D	A	A	P	I	H	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	D	V	Q	A	V	L	A	D	E	K	V	L	F	Q	N	Q	E	V	A	F	V	V	A	K	D	R	Y	V	A	A	D	A	I	E	L	V	E	V	D	Y	E	P	L	P	V	L	V	D	P	F	K	A	M	E	P	D	A	P	L	L	R	E	D	I	K	D	K	M	T	G	A	H	G	A	R	K	H	H	N
Template Known Secondary structure		.					S	S		S	S				S	T	T									S	S																								G	G	G	T	T	S	T	T						T	T	T	T	T					T	T				S	S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		N	L	L	K	Q	S	T	M	S	T	G	N	V	Q	Q	T	I	D	A	A	D	Y	Q	V	Q	G	H	Y	Q	T	P	V	I	Q	H	C	H	M	E	S	V	T	S	L	A	W	M	E	D	.	D	S	R	I	T	I	V	S	S	T	Q	I	P	H	I	V	R	R	V	V	G	Q	A	L	D	I	P	W	S	C
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		H	I	F	R	W	E	I	G	D	K	E	G	T	D	A	T	F	A	K	A	E	V	V	S	K	D	M	F	T	Y	H	R	V	H	P	S	P	L	E	T	C	Q	C	V	A	S	M	D	K	I	K	G	E	L	T	L	W	G	T	F	Q	A	P	H	V	I	R	T	V	V	S	L	I	S	G	L	P	E	H	K
Template Known Secondary structure																						S												B					S	S										T	T	T	T									S	S																G	G	G
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	V	I	K	P	F	V	G	G	G	F	G	N	K	Q	D	V	L	E	E	P	M	A	A	F	L	T	S	K	L	G	G	I	P	V	K	V	S	L	S	R	E	E	C	F	L	A	T	R	T	R	H	A	F	T	I	D	G	Q	M	G	V	N	R	D	G	T	L	K	G	Y	S	L	D	V	L	S	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	V	I	A	P	D	I	G	G	G	F	G	N	K	V	G	A	Y	S	G	Y	V	C	A	V	V	A	S	I	V	L	G	V	P	V	K	W	V	E	D	R	M	E	N	L	S	T	T	S	F	A	R	D	Y	H	M	T	T	E	L	A	A	T	K	D	G	K	I	L	A	M	R	C	H	V	L	A	D	H
Template Known Secondary structure								B		S			T	T	T	T	S	S																S	S															S																T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																			.	.																										.				.
Query SS confidence																			.	.																										.				.
Query Sequence		G	A	Y	A	S	H	G	H	S	I	A	S	A	G	G	N	K	.	.	V	A	Y	L	Y	P	R	C	A	Y	A	Y	S	S	K	T	C	Y	T	N	L	P	S	A	G	.	A	M	R	.	G	Y	G	A	P	Q	V	V	F	A	V	E	S	M	L	D	D	A	A	T	A	L	G	I	D	P	V	E	I	R	L
Query Conservation																			.	.																										.				.
Alig confidence																			.	.																										.				.
Template Conservation
Template Sequence		G	A	F	D	A	C	A	D	P	S	K	W	P	A	G	F	M	N	I	C	T	G	S	Y	D	M	P	V	A	H	L	A	V	D	G	V	Y	T	N	K	A	S	G	G	V	A	Y	R	C	S	F	R	V	T	E	A	V	Y	A	I	E	R	A	I	E	T	L	A	Q	R	L	E	M	D	S	A	D	L	R	I
Template Known Secondary structure			S	S							T	T		T	T	T	T	G	G	G	T	T	T	T	B			S												S	S					S		S	S		T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.								.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure										.	.																																		.	.	.	.	.	.	.																													.	.
Query SS confidence										.	.																																		.	.	.	.	.	.	.																													.	.
Query Sequence		R	N	A	A	R	E	G	D	.	.	A	N	P	L	T	G	K	R	I	Y	S	A	G	L	P	E	C	L	E	K	G	R	K	I	F	E	W	E	K	R	R	A	E	.	.	.	.	.	.	.	C	Q	N	Q	Q	G	N	L	R	R	G	V	G	V	A	C	F	S	Y	T	S	N	T	W	P	V	G	V	.	.
Query Conservation										.	.																																		.	.	.	.	.	.	.																													.	.
Alig confidence										.	.																																		.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		K	N	F	I	Q	P	E	Q	F	P	Y	M	A	P	L	G	W	E	Y	D	S	G	N	Y	P	L	A	M	K	K	A	M	D	T	V	G	Y	H	Q	L	R	A	E	Q	K	A	K	Q	E	A	F	K	R	G	E	T	R	E	I	M	G	I	G	I	S	F	F	T	E	I	V	G	A	G	P	S	K	N	C	D
Template Known Secondary structure				B			G	G	G		S				T	T	S																				T																	T	T	S		S														B	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
							451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	I	A	G	A	R	L	L	M	N	Q	D	G	T	I	N	V	Q	S	G	A	T	E	I	G	Q	G	A	D	T	V	F	S	Q	M	V	A	E	T	V	G	V	P	V	S	D	V	R	V	I	S	T	Q	D	T	D	V	T	P	F	D	P	G	A	F	A	S	R	Q	S	Y	V	A	A	P
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																				.
Template Conservation																																																										.
Template Sequence		I	L	G	V	S	M	F	D	S	A	E	I	R	I	H	P	T	G	S	V	I	A	R	M	G	T	K	S	Q	G	Q	G	H	E	T	T	Y	A	Q	I	I	A	T	E	L	G	I	P	A	D	D	I	M	I	E	E	.	G	N	T	D	T	A	P	Y	G	L	G	T	Y	G	S	R	S	T	P	T	A	G	A
Template Known Secondary structure			T	T													T	T	S							S				S	S	S															T			G	G	G						.		B	T	T	T	S						S		T	T		T	T	T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.		.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.			.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		A	L	R	S	A	A	L	L	L	K	E	K	I	I	A	H	A	A	V	M	L	H	Q	S	A	M	N	L	T	L	I	K	G	H	I	V	L	V	E	R	P	E	E	P	L	M	S	L	K	D	L	A	M	D	A	F	Y	H	P	E	R	.	.	G	G	Q	L	S	A	E	S	S	I	K	T	T	T	N	P	P
Query Conservation																																																															.	.
Alig confidence																																														.																	.	.
Template Conservation																																														.
Template Sequence		A	T	A	V	A	A	R	K	I	K	A	K	A	Q	M	I	A	A	H	M	L	E	V	H	E	G	D	L	E	W	D	V	D	R	F	R	V	K	G	L	P	E	K	F	.	K	T	M	K	E	L	A	W	A	S	Y	N	S	P	P	P	N	L	E	P	G	L	E	A	V	N	Y	Y	D	P	P	N	M	T	Y
Template Known Secondary structure																							T	S		G	G	G					S	S					T	T						.													S			T	T	S		S	S										S	S		B
Template Predicted Secondary structure																																														.
Template SS confidence
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.		.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	G	C	T	F	V	D	L	T	V	D	I	A	L	C	K	V	T	I	N	R	I	L	N	V	H	D	S	G	H	I	L	N	P	L	L	A	E	G	Q	V	H	G	G	M	G	M	G	I	G	W	A	L	F	E	E	M	I	I	D	A	K	S	G	V	V	R	N	P	N	L	L	D	Y	K	M	P	T	M
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		P	F	G	A	Y	F	C	I	M	D	I	D	V	D	T	G	V	A	K	T	R	R	F	Y	A	L	D	D	C	G	T	R	I	N	P	M	I	I	E	G	Q	V	H	G	G	L	T	E	A	F	A	V	A	M	G	Q	E	I	R	Y	D	.	E	Q	G	N	V	L	G	A	S	F	M	D	F	F	L	P	T	A
Template Known Secondary structure														T	T	T															B	S		S																						T							.	T	T					S		S	T	T	T	S					T
Template Predicted Secondary structure																																																															.
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.		.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.				.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		P	D	L	P	Q	L	E	S	A	F	V	E	I	N	E	P	Q	S	A	Y	G	H	K	S	L	G	E	P	P	I	I	P	V	A	A	A	I	R	N	A	V	K	M	A	T	.	.	.	G	V	A	I	N	T	L	P	L	T	P	K	R	L	Y	E	E	F	H	L	A	G	L
Query Conservation																																															.	.	.
Alig confidence																																															.	.	.
Template Conservation
Template Sequence		V	E	T	P	K	W	E	T	D	Y	T	V	T	P	S	P	H	H	P	I	G	A	K	G	V	G	E	S	P	H	V	G	G	V	P	C	F	S	N	A	V	N	D	A	Y	A	F	L	N	A	G	H	I	Q	M	P	H	D	A	W	R	L	W	K	V	G	E	Q	L	G	L
Template Known Secondary structure		T	T	S													T	T	S	T	T		B				T	T																				T	T	T						S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.