Return to main results Retrieve Phyre Job Id

Job DescriptionQ46799
Confidence100.00%DateThu Jan 5 12:34:21 GMT 2012
Rank1Aligned Residues740
% Identity27%Templatec1ffvB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  RVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKR
Query Conservation 
 
   



   
  

   


 
  



 


 
  

 
 
 
 


  
 
  


                  
Alig confidence 






































































.......

Template Conservation 
 
   



   
  

   


 
 




 


 
  

 
 
 
 


  


  


         .......  
Template Sequence  RKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPT. . . . . . . LA
Template Known Secondary structure 
SSTTT



GGG


TT

SSSS
STT
GGGT
S
.......TT
Template Predicted Secondary structure 


































.......

Template SS confidence 















































































   24.....30.........40.........50.........60.........70.........80.........90.... ..
 
   82.......90.........100.........110.........120.........130.........140.... ..
Predicted Secondary structure 
































...............

Query SS confidence 






























































. . . . . . . . . . . . . . .

Query Sequence  DTADRALLTRHVRHHGDAVAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHN. . . . . . . . . . . . . . . GG
Query Conservation        

   
 
 




 


 
   
  
   
 
 

 

 
     
    
  
  ...............  
Alig confidence 






























































...............

Template Conservation        

   


 








 
   
  
   
 



 

 
     

   

 
                   
Template Sequence  GDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHN
Template Known Secondary structure  S
SS

S
STT
SS






TSTT


S
GGGTT

TT
SSTT
Template Predicted Secondary structure 


















































Template SS confidence 















































































   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   147..150.........160.........170.........180.........190.... .....200.........210.........220.....
Predicted Secondary structure 

























.









Query SS confidence 















































.






























Query Sequence  NLLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWME. DDSRITIVSSTQIPHIVRRVVGQALDIPWSC
Query Conservation 
         

       
  


         
  


    
   . 

 
 
  


 
      

  



   
Alig confidence 















































.






























Template Conservation            

   

  
  


         
  


   

  
  

 
 
  


 
   
  

  



   
Template Sequence  HIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESK
Template Known Secondary structure 

S

B



SS

TTTT

S



GGG
Template Predicted Secondary structure 



































Template SS confidence 















































































   177..180.........190.........200.........210.........220.........230.........240.........250......
 
   226...230.........240.........250.........260.........270.........280.........290.........300.....
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  VRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNT
Query Conservation 
 
    





 
         
  

   




   

 
       
         
   

 
 
       
 
Alig confidence 















































































Template Conservation 
 
    


 

 
         

 

   




   

 
       
       


   

 
 
       
 
Template Sequence  VRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADH
Template Known Secondary structure 



S

TTTTSS

TS


S



TT


Template Predicted Secondary structure 































Template SS confidence 















































































   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   306...310... ......320.........330.........340.........350.........360.........370.........380...
Predicted Secondary structure 






..
























Query SS confidence 







. .





































































Query Sequence  GAYASHGH. . SIASAGGNKVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEIRLRN
Query Conservation 

      ..             
           
 

  
  
 

 
  
  

 
  

  
  

 

 
 
  
Alig confidence 







..





































































Template Conservation 


                  
 
 
 
       
 

  
 

 

 
 

  

 
  

 

  

 

 
 
 

Template Sequence  GAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKN
Template Known Secondary structure 
SS





TT
TTTTGGGTTTTB

S

SS

S



ST

TT
Template Predicted Secondary structure 

































Template SS confidence 















































































   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   384.....390 .........400.........410.........420. ........430.........440...... ...450
Predicted Secondary structure 






..














....










.......



Query SS confidence 






. .






























. . . .
























. . . . . . .



Query Sequence  AAREGDA. . NPLTGKRIYSAGLPECLEKGRKIFEWEKRRA. . . . ECQNQQGNLRRGVGVACFSYTSNTW. . . . . . . PVGV
Query Conservation      
  ..    
           
    
   
  
  ....          



 
         .......    
Alig confidence 






..






























....
























.......



Template Conservation      
        
           
    
                       



 
      
             
Template Sequence  FIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVG
Template Known Secondary structure  B

GGG
S
TTS




T
TT
S

B



TTT
TT
Template Predicted Secondary structure 

















































Template SS confidence 















































































   419420.........430.........440.........450.........460.........470.........480.........490........
 
   451........460.........470.........480.........490.........500.........510.........520.........530
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  EIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVSDVRVISTQDTDVTPFDPGAFASRQSYVAAPALRSA
Query Conservation      
 
 
  

 
 
  
    


  
   

 
  



 
 
 
    

   
   

  

 
   
 

  
Alig confidence 
















































.





























Template Conservation      
 
 
  



 
  
  
 


  
   

 
  


  
 
 
.   

   
    
 


 
   
 

  
Template Sequence  MFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQV. EEGDTSTAPYGLGTYGSRSTPVAGAAIALA
Template Known Secondary structure  S

TTS
S


SSS
T

GGG.

BTTTS




S
TT
Template Predicted Secondary structure 

















.












Template SS confidence 















































































   499500.........510.........520.........530.........540....... ..550.........560.........570.......
 
   531........540.........550.........560.........570.........580...... ...590.........600........
Predicted Secondary structure 




















..

















Query SS confidence 























































. .





















Query Sequence  ALLLKEKIIAHAAVMLHQSAMNLTLIKGHIVLVERPEEPLMSLKDLAMDAFYHPER. . GGQLSAESSIKTTTNPPAFGCT
Query Conservation     
   
   

              
                            ..                   

 
Alig confidence 






































.















..





















Template Conservation 
  
   
   

  
           
           .                                     

 
Template Sequence  ARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKF. KTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIY
Template Known Secondary structure  TTS
GGG
SSSS
TT
.


TT

SS

SS
B

Template Predicted Secondary structure 












.




























Template SS confidence 















































































   578.580.........590.........600.........610...... ...620.........630.........640.........650......
 
   609610.........620.........630.........640.........650.........660.........670.........680........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  FVDLTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGVVRNPNLLDYKMPTMPDLPQ
Query Conservation    




  

 
 
 
   
 
 
 



    


 

   


 

 
    
   
         
 

   


 
Alig confidence 























































.






















Template Conservation    




  

 
 
 
   
 
 
 



    


 

   


 

 

   
.  
         
 

   


 
Template Sequence  LCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFD. AQGNLLGNTLMDYFLPTAVETPH
Template Known Secondary structure  TTT


BS
S
T



B
.TT

B
S
STTTS



TTTS

Template Predicted Secondary structure 














.



















Template SS confidence 















































































   657..660.........670.........680.........690.........700.........710.. .......720.........730.....
 
   689690.........700.........710.........720....... ..730.........740.........750.
Predicted Secondary structure 

















...











Query SS confidence 






































. . .























Query Sequence  LESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMA. . . TGVAINTLPLTPKRLYEEFHLAGL
Query Conservation 
 
   
      
 



 

        

 


  
... 
 
   

 


 
  

  

 
Alig confidence 






































...























Template Conservation 
 
  

      
 






        





  
   

 
   

 


 
  

 
   
Template Sequence  WETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNL
Template Known Secondary structure 





TTSTT
B


TTGGGT




S


TT
Template Predicted Secondary structure 































Template SS confidence 

































































   736...740.........750.........760.........770.........780.........790.........800.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions