Job Description Q46799 Confidence 100.00% Date Thu Jan 5 12:34:21 GMT 2012 Rank 1 Aligned Residues 740 % Identity 27% Template c1ffvB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava Resolution 2.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	D	A	I	A	K	V	T	G	R	A	R	Y	T	D	D	Y	V	M	A	G	M	C	Y	A	K	Y	V	R	S	P	I	A	H	G	Y	A	V	S	I	N	D	E	Q	A	R	S	L	P	G	V	L	A	I	F	T	W	E	D	V	P	D	I	P	F	A	T	A	G	H	A	W	T	L	D	E	N	K	R
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		R	K	E	D	A	R	F	I	Q	G	K	G	N	Y	V	D	D	I	K	M	P	G	M	L	H	M	D	I	V	R	A	P	I	A	H	G	R	I	K	K	I	H	K	D	A	A	L	A	M	P	G	V	H	A	V	L	T	A	E	D	L	K	P	L	K	L	H	W	M	P	T	.	.	.	.	.	.	.	L	A
Template Known Secondary structure			S	S					T	T	T					G	G	G				T	T										S	S	S	S														S	T	T											G	G	G	T		S					.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.								.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	A	D	R	A	L	L	T	R	H	V	R	H	H	G	D	A	V	A	I	V	V	A	R	D	E	L	T	A	E	K	A	A	Q	L	V	S	I	E	W	Q	E	L	P	V	I	T	T	P	E	A	A	L	A	E	D	A	A	P	I	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	V	A	A	V	L	A	D	E	K	V	H	F	Q	M	Q	E	V	A	I	V	I	A	D	D	R	Y	I	A	A	D	A	V	E	A	V	K	V	E	Y	D	E	L	P	V	V	I	D	P	I	D	A	L	K	P	D	A	P	V	L	R	E	D	L	A	G	K	T	S	G	A	H	G	P	R	E	H	H	N
Template Known Secondary structure		S					S	S			S				S	T	T									S	S																												T	S	T	T				S		G	G	G	T	T					T	T				S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		N	L	L	K	Q	S	T	M	S	T	G	N	V	Q	Q	T	I	D	A	A	D	Y	Q	V	Q	G	H	Y	Q	T	P	V	I	Q	H	C	H	M	E	S	V	T	S	L	A	W	M	E	.	D	D	S	R	I	T	I	V	S	S	T	Q	I	P	H	I	V	R	R	V	V	G	Q	A	L	D	I	P	W	S	C
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		H	I	F	T	W	G	A	G	D	K	A	A	T	D	A	V	F	A	N	A	P	V	T	V	S	Q	H	M	Y	Y	P	R	V	H	P	C	P	L	E	T	C	G	C	V	A	S	F	D	P	I	K	G	D	L	T	T	Y	I	T	S	Q	A	P	H	V	V	R	T	V	V	S	M	L	S	G	I	P	E	S	K
Template Known Secondary structure																						S												B					S	S										T	T	T	T									S																	G	G	G
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	V	I	K	P	F	V	G	G	G	F	G	N	K	Q	D	V	L	E	E	P	M	A	A	F	L	T	S	K	L	G	G	I	P	V	K	V	S	L	S	R	E	E	C	F	L	A	T	R	T	R	H	A	F	T	I	D	G	Q	M	G	V	N	R	D	G	T	L	K	G	Y	S	L	D	V	L	S	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	I	V	S	P	D	I	G	G	G	F	G	N	K	V	G	I	Y	P	G	Y	V	C	A	I	V	A	S	I	V	L	G	R	P	V	K	W	V	E	D	R	V	E	N	I	S	T	T	A	F	A	R	D	Y	H	M	D	G	E	L	A	A	T	P	D	G	K	I	L	G	L	R	V	N	V	V	A	D	H
Template Known Secondary structure										S			T	T	T	T	S	S																T	S															S																T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		306	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		G	A	Y	A	S	H	G	H	.	.	S	I	A	S	A	G	G	N	K	V	A	Y	L	Y	P	R	C	A	Y	A	Y	S	S	K	T	C	Y	T	N	L	P	S	A	G	A	M	R	G	Y	G	A	P	Q	V	V	F	A	V	E	S	M	L	D	D	A	A	T	A	L	G	I	D	P	V	E	I	R	L	R	N
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		G	A	F	D	A	C	A	D	P	T	K	F	P	A	G	L	F	H	I	C	S	G	S	Y	D	I	P	R	A	H	C	S	V	K	G	V	Y	T	N	K	A	P	G	G	V	A	Y	S	F	R	V	T	E	A	V	Y	L	I	E	R	M	V	D	V	L	A	Q	K	L	N	M	D	K	A	E	I	R	A	K	N
Template Known Secondary structure			S	S							T	T		T	T	T	T	G	G	G	T	T	T	T	B			S												S	S					S					S																				T			T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		384	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.					.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.								.	.	.	450
Predicted Secondary structure									.	.																																.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence									.	.																																.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		A	A	R	E	G	D	A	.	.	N	P	L	T	G	K	R	I	Y	S	A	G	L	P	E	C	L	E	K	G	R	K	I	F	E	W	E	K	R	R	A	.	.	.	.	E	C	Q	N	Q	Q	G	N	L	R	R	G	V	G	V	A	C	F	S	Y	T	S	N	T	W	.	.	.	.	.	.	.	P	V	G	V
Query Conservation									.	.																																.	.	.	.																										.	.	.	.	.	.	.
Alig confidence									.	.																																.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	R	K	E	Q	F	P	Y	T	T	Q	F	G	F	E	Y	D	S	G	D	Y	H	T	A	L	K	K	V	L	D	A	V	D	Y	P	A	L	R	A	E	Q	A	A	R	R	A	D	P	N	S	P	T	L	M	G	I	G	L	V	T	F	T	E	V	V	G	A	G	P	S	K	M	C	D	I	L	G	V	G
Template Known Secondary structure		B			G	G	G		S				T	T	S																				T															T	T		S														B					T	T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	G	A	R	L	L	M	N	Q	D	G	T	I	N	V	Q	S	G	A	T	E	I	G	Q	G	A	D	T	V	F	S	Q	M	V	A	E	T	V	G	V	P	V	S	D	V	R	V	I	S	T	Q	D	T	D	V	T	P	F	D	P	G	A	F	A	S	R	Q	S	Y	V	A	A	P	A	L	R	S	A
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		M	F	D	S	C	E	I	R	I	H	P	T	G	S	A	I	A	R	M	G	T	I	T	Q	G	Q	G	H	Q	T	T	Y	A	Q	I	I	A	T	E	L	G	I	P	S	E	V	I	Q	V	.	E	E	G	D	T	S	T	A	P	Y	G	L	G	T	Y	G	S	R	S	T	P	V	A	G	A	A	I	A	L	A
Template Known Secondary structure		S										T	T	S							S				S	S	S															T			G	G	G				.				B	T	T	T	S						S		T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.		.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.			.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		A	L	L	L	K	E	K	I	I	A	H	A	A	V	M	L	H	Q	S	A	M	N	L	T	L	I	K	G	H	I	V	L	V	E	R	P	E	E	P	L	M	S	L	K	D	L	A	M	D	A	F	Y	H	P	E	R	.	.	G	G	Q	L	S	A	E	S	S	I	K	T	T	T	N	P	P	A	F	G	C	T
Query Conservation																																																										.	.
Alig confidence																																									.																	.	.
Template Conservation																																									.
Template Sequence		A	R	K	I	H	A	K	A	R	K	I	A	A	H	M	L	E	V	N	E	N	D	L	D	W	E	V	D	R	F	K	V	K	G	D	D	S	K	F	.	K	T	M	A	D	I	A	W	Q	A	Y	H	Q	P	P	A	G	L	E	P	G	L	E	A	V	H	Y	Y	D	P	P	N	F	T	Y	P	F	G	I	Y
Template Known Secondary structure																	T	T	S		G	G	G					S	S					S	S		T	T			.																T	T			S	S										S	S		B
Template Predicted Secondary structure																																									.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.		.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	D	L	T	V	D	I	A	L	C	K	V	T	I	N	R	I	L	N	V	H	D	S	G	H	I	L	N	P	L	L	A	E	G	Q	V	H	G	G	M	G	M	G	I	G	W	A	L	F	E	E	M	I	I	D	A	K	S	G	V	V	R	N	P	N	L	L	D	Y	K	M	P	T	M	P	D	L	P	Q
Query Conservation
Alig confidence																																																										.
Template Conservation																																																										.
Template Sequence		L	C	V	V	D	I	D	R	A	T	G	E	T	K	V	R	R	F	Y	A	L	D	D	C	G	T	R	I	N	P	M	I	I	E	G	Q	I	H	G	G	L	T	E	G	Y	A	V	A	M	G	Q	Q	M	P	F	D	.	A	Q	G	N	L	L	G	N	T	L	M	D	Y	F	L	P	T	A	V	E	T	P	H
Template Known Secondary structure									T	T	T															B	S		S																						T					B		.	T	T			B		S		S	T	T	T	S					T	T	T	S
Template Predicted Secondary structure																																																										.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.		.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.				.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		L	E	S	A	F	V	E	I	N	E	P	Q	S	A	Y	G	H	K	S	L	G	E	P	P	I	I	P	V	A	A	A	I	R	N	A	V	K	M	A	.	.	.	T	G	V	A	I	N	T	L	P	L	T	P	K	R	L	Y	E	E	F	H	L	A	G	L
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		W	E	T	D	H	T	V	T	P	S	P	H	H	P	I	G	A	K	G	V	A	E	S	P	H	V	G	S	I	P	T	F	T	A	A	V	V	D	A	F	A	H	V	G	V	T	H	L	D	M	P	H	T	S	Y	R	V	W	K	S	L	K	E	H	N	L
Template Known Secondary structure												T	T	S	T	T		B				T	T																			G	G	G	T						S														T	T
Template Predicted Secondary structure
Template SS confidence
		736	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.