Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 11 Aligned Residues 324 % Identity 15% Template c3oo2B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Resolution 2.37 Å

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		23	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																																			.	.	.
Query SS confidence												.																																			.	.	.
Query Sequence		Q	G	K	I	A	P	D	S	W	V	.	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	.	.	.	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P
Query Conservation												.																																			.	.	.
Alig confidence												.																			.	.															.	.	.
Template Conservation																															.	.
Template Sequence		S	D	K	Y	Y	R	S	A	Y	M	N	V	D	L	N	A	V	A	S	N	F	K	V	F	S	T	L	H	P	.	.	N	K	T	V	M	A	V	V	K	A	N	A	Y	G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	F	F	A	V	A	T	L	D	E	A	I	E	L	R	M	H	G	I	T
Template Known Secondary structure							S	S																					S	T	.	.	T	S												T	T											T	T	T							S	S										T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	H	Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E
Query Conservation
Alig confidence						.																			.														.	.	.																						.	.	.	.	.
Template Conservation						.																			.														.	.	.																						.	.	.	.	.
Template Sequence		A	K	I	L	.	V	L	G	V	L	P	A	K	D	I	D	K	A	I	Q	H	R	V	.	A	L	T	V	P	S	K	Q	W	L	K	E	A	.	.	.	I	K	N	I	S	K	K	L	W	L	H	I	K	L	D	T	G	M	G	R	L	.	.	.	.	.	G	I	K	D	T	K	T	Y	Q	E	V	I	E	I
Template Known Secondary structure		S				.			S				G	G	G							T	T		.	B													.	.	.	T	T	S											B			S	S		S	S	.	.	.	.	.	S	B
Template Predicted Secondary structure						.																			.														.	.	.																						.	.	.	.	.
Template SS confidence
		80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A
Query Conservation
Alig confidence																	.	.										.														.	.	.	.																	.	.	.
Template Conservation																	.	.										.														.	.	.	.																	.	.	.
Template Sequence		I	Q	Q	Y	E	Q	L	V	F	E	G	V	F	T	H	.	.	F	A	C	A	D	E	P	G	D	.	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	.	.	.	.	N	E	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	.	.	.	S	L	L	M	D	C	Q	F	C	N	A	I	R	P	G	I	S
Template Known Secondary structure						T	T										.	.		S		T	T	S		S	S	.														.	.	.	.	T	T	S				S										.	.	.							S	S								G	G
Template Predicted Secondary structure																	.	.										.														.	.	.	.																	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		259	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320												.	.	.	.
Predicted Secondary structure											.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	G	T	I	P	A	N	Q	.	.	.	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T
Query Conservation											.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																					.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	G	Y	Y	P	S	E	Y	V	Q	Q	K	V	K	V	H	L	K	P	S	V	Q	L	I	A	N	V	V	Q	T	K	.	.	.	.	.	.	.	.	.	.	T	L	Q	A	D	P	T	T	I	A	L	L	P	I	G	Y	A	D	G	Y	L	R	I	M	Q	G	S	F	V	N	V	N	G	H	Q	C	E	V
Template Known Secondary structure		G	G	T			S						T	T																				.	.	.	.	.	.	.	.	.	.													S			G	G	G	T			G	G	G	T	T						T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.											.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		325	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.							.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																.																						.	.	.	.	.	.
Query SS confidence									.																.																						.	.	.	.	.	.
Query Sequence		V	D	D	S	S	I	D	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	.	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I	.	.	.	.	.	.	H	R	G	E	P	E	I	V	G	R	Y
Query Conservation									.																.																						.	.	.	.	.	.
Alig confidence									.																.																						.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	R	V	C	M	D	Q	T	I	V	K	V	P	D	Q	V	K	A	G	D	S	V	I	L	I	D	N	H	R	E	S	P	Q	S	V	E	V	V	A	E	K	Q	H	T	I	N	Y	E	V	L	C	N	L	S	R	R	L	P	R	I	Y
Template Known Secondary structure			S				S	S								T	T			T	T								S		S	S	S	T	T	S								T	T	S									S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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