Job Description P45550 Confidence 99.84% Date Thu Jan 5 12:03:07 GMT 2012 Rank 47 Aligned Residues 214 % Identity 16% Template c3nzpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		P	A	L	I	S	A	A	L	S	L	W	Q	Q	G	K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	.	.	.	.	.	.	.	.	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	.	.	.
Query Conservation																																											.	.	.	.	.	.	.	.																													.	.	.
Alig confidence																				.																							.	.	.	.	.	.	.	.														.															.	.	.
Template Conservation																				.																																												.
Template Sequence		P	A	I	I	D	I	V	K	E	L	R	D	D	G	Y	K	G	P	.	L	L	L	R	F	P	H	L	I	Q	K	Q	I	E	N	I	Y	G	N	F	N	K	A	R	K	E	F	G	Y	K	G	G	F	N	A	V	Y	P	L	K	V	N	Q	.	Y	P	G	F	V	K	N	L	V	K	L	G	K	D	Y	N	Y
Template Known Secondary structure			B											T	T			S		.																											T	T			S								G	G	G			.												T	G	G	G	T
Template Predicted Secondary structure																				.																																												.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																												.	.	.	.																					.
Query SS confidence																																												.	.	.	.																					.
Query Sequence		G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	.	.	.	.	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	.	A	G	R	I	Q	S	V	L	L	K	V	Y	S
Query Conservation																																												.	.	.	.																					.
Alig confidence																																												.	.	.	.																					.
Template Conservation
Template Sequence		G	L	E	A	G	S	K	A	E	L	L	L	A	X	A	Y	N	N	E	G	A	P	I	T	V	N	G	F	K	D	R	E	L	I	N	I	G	F	I	A	A	E	X	G	H	N	I	T	L	T	I	E	G	L	N	E	L	E	A	I	I	D	I	A	K	E	R	F	K	P	K	P	N	I	G	L	R	V	R	L
Template Known Secondary structure							S											S		T	T	S						S																T	T								S	S												T	T	S		S									B
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.
Predicted Secondary structure																																	.																																										.
Query SS confidence																																	.																																										.
Query Sequence		D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L	.	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	.	A	L	E	Q	L	N
Query Conservation																																	.																																										.
Alig confidence							.	.	.	.	.	.																					.									.	.	.																															.
Template Conservation							.	.	.	.	.	.																														.	.	.
Template Sequence		H	S	A	K	F	.	.	.	.	.	.	G	L	T	S	T	E	L	I	E	A	V	N	L	L	K	E	N	K	L	L	E	Q	F	T	X	I	H	F	H	.	.	.	L	G	S	Q	I	T	E	I	H	P	L	K	K	A	L	N	E	A	G	N	I	Y	T	E	L	R	K	X	G	A	K	N	L	K	A	I	N
Template Known Secondary structure		T	T				.	.	.	.	.	.	S	B															T	T		T	T	T								.	.	.			S		B			S																				T	T		T	T
Template Predicted Secondary structure							.	.	.	.	.	.																														.	.	.
Template SS confidence
		187	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		233	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	G
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		271	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions