Job Description P45550 Confidence 99.90% Date Thu Jan 5 12:03:07 GMT 2012 Rank 43 Aligned Residues 285 % Identity 15% Template c3n29A_ PDB info PDB header:lyase Chain: A: PDB Molecule:carboxynorspermidine decarboxylase; PDBTitle: crystal structure of carboxynorspermidine decarboxylase complexed with2 norspermidine from campylobacter jejuni Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G	H
Query Conservation
Alig confidence																																										.														.											.
Template Conservation																																										.														.											.
Template Sequence		K	I	Q	T	P	A	Y	I	L	E	E	D	K	L	R	K	N	C	E	L	L	A	S	V	G	E	K	S	G	A	K	V	L	L	A	L	K	G	F	A	.	F	S	G	A	M	K	I	V	G	E	Y	L	K	.	G	C	T	C	S	G	L	W	E	A	.	K	F	A	K	E	Y	M	D	K	E	I	H	T	Y
Template Known Secondary structure		T			S	S																															T	T	T			.		G	G	G								S		.					S	S					.							T		S
Template Predicted Secondary structure																																										.														.											.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G
Query Conservation
Alig confidence																			.																																						.	.	.	.	.	.								.	.	.	.	.	.	.
Template Conservation																			.																																						.	.	.	.	.	.								.	.	.	.	.	.	.
Template Sequence		S	P	A	F	K	E	D	E	I	G	E	I	A	S	L	S	H	.	H	I	V	F	N	S	L	A	Q	F	H	K	F	Q	S	K	T	Q	K	N	S	L	G	L	R	C	N	V	E	F	S	G	R	Y	S	R	L	.	.	.	.	.	.	G	I	R	A	K	D	F	.	.	.	.	.	.	.	E	N	V	D	L
Template Known Secondary structure			S	S														S	.					S	S								G	G	G		T	T	S						B							T	T			S	.	.	.	.	.	.	S	B		G	G	G	G	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																			.																																						.	.	.	.	.	.								.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.								.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.													.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence													.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		N	A	I	E	G	L	H	F	H	A	L	.	.	.	.	.	.	.	C	E	E	S	A	D	A	L	E	A	V	L	K	V	F	E	E	K	F	G	K	W	I	G	Q	M	K	W	V	N	F	G	G	G	H	H	I	T	K	K	G	Y	D	V	E	K	L	I	A	L	C	K	N	F	S	D	K	Y	G	V	Q	V
Template Known Secondary structure		T	T										.	.	.	.	.	.	.	S	S	B																	G	G	G	T	T	T		S						S		B		T	T	S	T	T																		T
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	E	P	G	E	A	V	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	G	N	L	V	A	S	V	V	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	N	E	K	Q	I	A	I	L	D	T	S	S	E	A	H	M	P	D	T	I	I	M	P	Y	T	S	E	V	L	N
Template Known Secondary structure						S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S						S	S						S						T	T					B	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240														.	.	.	.	.	.	.	.	.	250	.	.														.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
																								321	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T	V	D	D	S	S	I	D	Y	T	L	P	.	.	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		A	R	I	L	A	T	R	E	N	E	K	I	S	D	L	K	E	N	E	F	A	Y	L	L	T	G	N	T	C	L	A	G	D	V	M	G	E	Y	A	F	D	K	K	L	K	I	G	D	K	I	V	F	L	D	Q	I	H	Y	T	I	V	K	N
Template Known Secondary structure								T	T			B						T	T									S	S	S		T	T									S	S				T	T						S	S		S	S	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions