Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 5 Aligned Residues 327 % Identity 18% Template c3mubB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from streptococcus2 pneumoniae Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	.	.	.	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G	H
Query Conservation																																										.	.	.
Alig confidence																										.	.															.	.	.						.
Template Conservation																										.	.																							.
Template Sequence		P	T	K	A	L	I	H	L	G	A	I	R	Q	N	I	Q	Q	M	G	A	H	I	P	Q	.	.	G	T	L	K	L	A	V	V	A	N	A	Y	G	H	G	A	V	A	V	A	K	A	.	I	Q	D	D	V	D	G	F	C	V	S	N	I	D	E	A	I	E	L	R	Q	A	G	L	S	K	P	I	L	I	L
Template Known Secondary structure		S																				T	S		T	.	.	T									T	T	T	T	T									.		G	G	G		S					S	S											T			S
Template Predicted Secondary structure																										.	.																							.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G
Query Conservation
Alig confidence		.																	.																								.	.													.	.	.	.	.	.
Template Conservation		.																	.																								.	.													.	.	.	.	.	.
Template Sequence		.	G	V	S	E	I	E	A	V	A	L	A	K	E	Y	D	F	.	T	L	T	V	A	G	L	E	W	I	Q	A	L	L	D	K	E	V	D	L	T	G	L	.	.	T	V	H	L	I	D	S	G	M	G	R	I	.	.	.	.	.	.	G	F	R	E	A	S	E	V	E	Q	A	Q	D	L	L	Q	Q	H	G
Template Known Secondary structure		.	S				G	G	G								T		.																T	T				T	T		.	.							S	S	S		S	S	.	.	.	.	.	.	S			S														T	T
Template Predicted Secondary structure		.																	.																								.	.													.	.	.	.	.	.
Template SS confidence
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T	I	P
Query Conservation
Alig confidence											.	.																															.	.	.											.	.	.
Template Conservation											.	.																															.	.	.											.	.	.
Template Sequence		V	C	V	E	G	I	F	T	H	.	.	F	A	T	A	D	E	E	S	D	D	Y	F	N	A	Q	L	E	R	F	K	T	I	L	A	S	M	K	E	V	P	.	.	.	E	L	V	H	A	S	N	S	A	T	.	.	.	T	L	W	H	V	E	T	I	F	N	A	V	R	M	G	D	A	M	Y	G	L	N	P
Template Known Secondary structure											.	.		S	S	T	T	S	S																				S	S			.	.	.	S										.	.	.					G	G	G			S						T	T	T	T	T			T
Template Predicted Secondary structure											.	.																															.	.	.											.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320												.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.												.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.												.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	Q	Q	G	D	Q	.	.	P	E	R	I	A	M	L	W	L	S	E	.	.	.	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T	V	D	D	S
Query Conservation									.	.												.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.												.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	A	V	L	D	L	P	Y	D	L	I	P	A	L	T	L	E	S	A	L	V	H	V	K	T	V	P	A	G	A	C	M	G	Y	G	A	T	Y	Q	A	D	S	E	Q	V	I	A	T	V	P	I	G	Y	A	D	G	W	T	R	D	M	Q	N	F	S	V	L	V	D	G	Q	A	C	P	I	V	G	R	V
Template Known Secondary structure		T	T	T	S	S			S	S													S							T	T				S	G	G	G					S	S								S			G	G	G	T			G	G	G	T	T						T	T					B		S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		329	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.										.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure					.																.																	.	.	.	.	.	.	.	.	.
Query SS confidence					.																.																	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	D	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	.	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	.	.	.	.	.	.	.	.	.	L	V	S	G	I	H	R	G	E	P	E	I	V	G	R	Y
Query Conservation					.																.																	.	.	.	.	.	.	.	.	.
Alig confidence					.																.																	.	.	.	.	.	.	.	.	.							.	.	.
Template Conservation																																																					.	.	.
Template Sequence		S	M	D	Q	I	T	I	R	L	P	K	L	Y	P	L	G	T	K	V	T	L	I	G	S	N	G	D	K	E	I	T	A	T	Q	V	A	T	Y	R	V	T	I	N	Y	E	V	V	C	L	L	S	.	.	.	D	R	I	P	R	E	Y
Template Known Secondary structure			S	S							S	S				T	T										T	T													T	S								T	S		.	.	.	T	T	S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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