Job Description P45550 Confidence 99.87% Date Thu Jan 5 12:03:07 GMT 2012 Rank 46 Aligned Residues 292 % Identity 12% Template c3mt1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti Resolution 2.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G	H
Query Conservation
Alig confidence																																										.														.																		.
Template Conservation																																										.														.																		.
Template Sequence		X	I	E	T	P	Y	Y	L	I	D	K	A	K	L	T	R	N	X	E	R	I	A	H	V	R	E	K	S	G	A	K	A	L	L	A	L	K	C	F	A	.	T	W	S	V	F	D	L	X	R	D	Y	X	D	.	G	T	T	S	S	S	L	F	E	V	R	L	G	R	E	R	F	.	G	K	E	T	H	A	Y
Template Known Secondary structure					S	S																															T	T	T			.		G	G	G						T	T			.					S	S											T	.		S
Template Predicted Secondary structure																																										.														.																		.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G
Query Conservation
Alig confidence																			.														.	.	.	.																		.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																			.														.	.	.	.																		.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		S	V	A	Y	G	D	N	E	I	D	E	V	V	S	H	A	D	.	K	I	I	F	N	S	I	S	Q	L	E	R	F	.	.	.	.	A	D	K	A	A	G	I	A	R	G	L	R	L	N	P	Q	R	.	.	.	.	.	.	.	.	L	G	E	W	D	V	P	K	V	E	.	.	.	.	.	.	.	R	V	X
Template Known Secondary structure			S	S														S	.					S	S								.	.	.	.	T	T	T	T	T	T	S						B					.	.	.	.	.	.	.	.		S	B								.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																			.														.	.	.	.																		.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.	.	.	130	.	.	.	.								.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.													.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence														.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation														.	.	.	.	.	.
Template Sequence		D	R	I	N	G	F	X	I	H	N	N	C	.	.	.	.	.	.	E	N	K	D	F	G	L	F	D	R	X	L	G	E	I	E	E	R	F	G	A	L	I	A	R	V	D	W	V	S	L	G	G	G	I	H	F	T	G	D	D	Y	P	V	D	A	F	S	A	R	L	R	A	F	S	D	R	Y	G	V	Q	I
Template Known Secondary structure		T	S										S	.	.	.	.	.	.	S	B																								S	S						S		B		T	T	S	T	T																		T
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																									.	.												.	.	.	.	.
Query SS confidence																																									.	.												.	.	.	.	.
Query Sequence		H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	.	.	S	Y	C	Y	G	G	G	Y	Y	R	R	.	.	.	.	.	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	N	L	K	T
Query Conservation																																									.	.												.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.												.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	E	P	G	E	A	S	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	T	T	L	E	V	T	V	L	D	T	L	Y	N	K	N	L	A	I	V	D	S	S	I	E	A	H	X	L	D	L	L	I	Y	R	E	T	A	K	V	L	P	N	E	G	S	H	S	Y	X	I	C	G	K	S	C
Template Known Secondary structure						S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	T																					S														T						S	S			S	S								S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.														.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	D	S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		L	A	G	D	V	F	G	E	F	R	F	A	.	E	E	L	K	V	G	D	R	I	S	F	Q	D	A	A	G	Y	T	X	V	K	K
Template Known Secondary structure			T	T									S	.	S				T	T						S	S			T	T	T	G	G	G
Template Predicted Secondary structure														.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions