Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 6 Aligned Residues 331 % Identity 14% Template c3kw3B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate Resolution 2.04 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	.	.	.	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G
Query Conservation																																										.	.	.
Alig confidence																											.	.	.													.	.	.
Template Conservation																											.	.	.
Template Sequence		A	T	A	I	A	T	I	D	V	R	A	I	V	A	N	Y	R	T	L	A	Q	H	V	A	P	.	.	.	T	E	C	S	A	V	V	A	N	A	Y	G	L	G	A	H	K	I	A	P	A	L	Y	Q	A	G	C	R	T	F	F	V	A	Q	I	E	E	A	L	Q	L	K	A	V	L	P	E	N	V	M	I	A
Template Known Secondary structure			S																						T	T	.	.	.	S								T	T	T	T	T												T	T							S	S											S		S	S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P
Query Conservation
Alig confidence																				.																																						.	.	.	.	.	.
Template Conservation																				.																																						.	.	.	.	.	.
Template Sequence		L	L	N	G	F	P	H	K	A	E	E	F	V	A	Q	S	G	I	.	I	P	L	L	N	S	W	S	T	I	E	D	W	Q	T	L	C	Q	K	K	N	K	K	F	P	A	I	I	Q	V	D	T	N	M	S	R	L	.	.	.	.	.	.	G	L	D	K	K	E	L	Q	K	L	I	K	N	P	T	I	F	E
Template Known Secondary structure			T	T				T	T								T	T		.						S															T									B		S	S	S		S	S	.	.	.	.	.	.	S	B													T
Template Predicted Secondary structure																				.																																						.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T	I
Query Conservation
Alig confidence												.	.																									.	.	.	.	.															.	.	.
Template Conservation												.	.																									.	.	.	.	.															.	.	.
Template Sequence		K	A	E	I	K	Y	I	L	S	H	.	.	L	A	N	G	E	D	A	S	H	S	S	N	N	K	Q	L	A	A	F	K	R	V	L	A	.	.	.	.	.	Q	L	P	T	C	K	V	S	F	A	N	S	G	G	.	.	.	I	F	L	G	S	D	F	Y	F	D	L	V	R	P	G	I	A	L	Y	G	V	D
Template Known Secondary structure			S									.	.		S	S	T	T		S	S		T															.	.	.	.	.	T	S													.	.	.		T	S		G	G	G		T	T					S	G	G	G	G	T
Template Predicted Secondary structure												.	.																									.	.	.	.	.															.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320													.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	.	.	.	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T	V	D	D	S
Query Conservation																					.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																		.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		P	.	H	G	K	H	P	T	P	L	K	A	V	V	K	V	E	A	Q	V	L	Q	S	R	F	I	D	A	G	I	P	V	G	Y	R	E	S	F	M	T	R	R	P	S	T	L	A	T	I	S	I	G	Y	A	D	G	W	P	R	I	L	S	N	K	G	T	V	Y	F	N	G	H	K	L	P	I	V	G	H	I
Template Known Secondary structure		T	.	T			S	S		S																			S	S				S	G	G	G					S	S								S			G	G	G	T			G	G	G	T	T	T						T	T					B		S
Template Predicted Secondary structure			.
Template SS confidence
		236		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		329	330	.					.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																.									.	.
Query SS confidence					.	.	.	.																.									.	.
Query Sequence		S	I	D	.	.	.	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	.	V	L	C	F	R	T	Q	I	.	.	F	V	T	R	S	D	V	V	L	V	S	G	I	H	R	G	E	P	E	I	V	G	R	Y
Query Conservation					.	.	.	.																.									.	.
Alig confidence					.	.	.	.																.									.	.
Template Conservation
Template Sequence		S	M	D	S	I	I	V	D	A	T	D	L	D	K	K	P	Q	R	G	D	W	V	E	L	I	G	P	H	Q	P	L	E	K	V	S	T	D	T	N	T	I	P	H	E	I	L	T	S	L	G	K	R	Y	K	R	I	Y
Template Known Secondary structure			S	S							T	T		S	S				T	T							B	T	T	B										T	S								T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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