Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 17 Aligned Residues 334 % Identity 14% Template c3gwqB_ PDB info PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		E	D	V	S	L	P	A	A	V	L	Y	A	D	R	V	E	H	N	L	K	W	X	Q	A	F	V	A	E	Y	G	V	K	L	A	P	H	G	K	.	T	T	X	A	P	Q	L	F	R	R	Q	L	E	T	G	A	W	G	I	T	L	A	T	A	H	Q	V	R	A	A	Y	H	G	G	V	S	R	V	L	X	A
Template Known Secondary structure		T		S		S	S																						S	S	S						B		T	.	T	T												T	T							S	S										T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.														.	.	.
Query SS confidence								.														.	.	.
Query Sequence		H	L	V	Q	I	P	.	C	H	Q	V	A	D	A	V	E	Q	G	T	D	.	.	.	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I
Query Conservation								.														.	.	.
Alig confidence								.														.	.	.																																						.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence		N	Q	L	V	G	R	R	N	X	X	X	V	A	E	L	L	S	D	P	E	F	E	F	F	C	L	V	D	S	V	E	G	V	E	Q	L	G	E	F	F	K	S	V	N	K	Q	L	Q	V	L	L	E	L	G	V	P	G	G	R	T	.	.	.	.	.	G	V	R	D	A	A	Q	R	N	A	V	L	E	A	I
Template Known Secondary structure						S									T	T	T	T		T	T																							T	T												T	T	S	S	S	.	.	.	.	.	S	B		S
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Q	N	L	P	.	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A
Query Conservation						.
Alig confidence						.																																					.																			.	.	.
Template Conservation																																											.																			.	.	.
Template Sequence		T	R	Y	P	D	T	L	K	L	A	G	V	E	L	Y	E	G	V	L	K	E	E	H	E	V	R	E	F	L	Q	S	A	V	A	V	T	R	E	L	V	E	.	Q	E	R	F	A	R	A	P	A	V	L	S	G	A	G	S	A	W	.	.	.	Y	D	V	V	A	E	E	F	V	K	A	S	E	T	G	K	V
Template Known Secondary structure			T	S	T	T	T										G	G	G			S																					.	T	T			S	S	S	S								S	T	T	.	.	.													T	T	S	S
Template Predicted Secondary structure																																											.																			.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		259	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.										.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure													.														.																																			.	.	.	.	.	.	.	.	.
Query SS confidence													.														.																																			.	.	.	.	.	.	.	.	.
Query Sequence		L	T	G	T	I	P	A	N	Q	Q	G	.	D	Q	P	E	R	I	A	M	L	W	L	S	E	.	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	.	.	.	.	.	.	.	.	.	I	T	E	T	N	L	K	T	V	D	D
Query Conservation													.														.																																			.	.	.	.	.	.	.	.	.
Alig confidence													.														.																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	V	L	R	P	G	C	Y	L	T	X	G	E	G	L	L	P	A	L	Q	L	W	A	Y	V	Q	S	I	P	E	P	D	R	A	I	I	G	L	G	K	R	D	S	A	F	D	A	G	X	P	E	P	A	R	H	Y	R	P	G	N	E	A	P	R	D	I	A	A	S	E	G	W	E	I	F	G	L	X	D
Template Known Secondary structure										S					T	T																	T	T					S			T	T	T	S		G	G	G											T	T	S	S	S						G	G	G									S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.										350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.
Query Sequence		S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	.	.	.	.	.	.	.	.	.	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I
Query Conservation																								.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	H	A	Y	L	R	I	P	A	G	A	D	L	K	V	G	D	X	I	A	F	D	I	S	H	P	C	L	T	F	D	K	W	R	Q	V	L	V	V	D	P	A	Y	R	V	T	E	V	I
Template Known Secondary structure		S								T	T		S			T	T								S	S					G	G	G		S							T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions