Job Description P45550 Confidence 99.96% Date Thu Jan 5 12:03:07 GMT 2012 Rank 34 Aligned Residues 311 % Identity 14% Template c2yxxA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) Resolution 1.70 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	.	H	Q	G	H	L	V	Q
Query Conservation																																																																										.
Alig confidence																																						.														.																						.
Template Conservation																																						.														.
Template Sequence		P	T	Y	V	Y	F	E	E	T	L	R	K	R	S	R	L	V	K	E	V	F	E	G	V	N	L	L	P	T	F	A	V	K	A	N	N	.	N	P	V	L	L	K	I	L	R	E	E	G	F	.	G	X	D	V	V	T	K	G	E	L	L	A	A	K	L	A	G	V	P	S	H	T	V	V	W	N	G	N	G
Template Known Secondary structure		S																				T	T	T	S								G	G	G			.											T	T		.						S										T	T			G	G	G						S
Template Predicted Secondary structure																																						.														.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.									.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.
Query Sequence		I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	.	.	.	.	.	.	.	.	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I
Query Conservation																																																								.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.
Template Sequence		K	S	R	D	Q	X	E	H	F	L	R	E	D	V	R	I	V	N	V	D	S	F	E	E	X	E	I	W	R	E	L	N	P	E	.	.	.	G	V	E	Y	F	I	R	V	N	P	E	V	D	A	K	T	H	P	H	I	S	T	G	L	K	K	H	K	F	G	I	P	L	E	D	L	D	S	F	X	E	R	F
Template Known Secondary structure													T	T																					T	.	.	.	T													T	T	T	S										S	S	S	S			G	G	G
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence		Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	.	.	.	.	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P
Query Conservation																																																									.	.	.	.
Alig confidence		.	.	.															.	.	.	.	.	.																																	.	.	.	.
Template Conservation		.	.	.															.	.	.	.	.	.
Template Sequence		.	.	.	R	S	X	N	I	R	G	L	H	V	H	I	G	S	.	.	.	.	.	.	Q	I	T	R	V	E	P	F	V	E	A	F	S	K	V	V	R	A	S	E	R	Y	G	F	E	E	I	N	I	G	G	G	W	G	I	N	Y	S	G	E	E	L	D	L	S	S	Y	R	E	K	V	V	P	D	L	K	R
Template Known Secondary structure		.	.	.	T	T	S											S	.	.	.	.	.	.	S	B			S																		T		S								B				S	S	S												T	G	G	G	G	T	T
Template Predicted Secondary structure		.	.	.															.	.	.	.	.	.
Template SS confidence
					169	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.									.	.	.	.																												.	.
Query SS confidence																																					.	.	.	.									.	.	.	.																												.	.
Query Sequence		G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	.	.	.	.	S	Y	C	Y	G	G	G	Y	.	.	.	.	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	N	L	K	T	V	.	.
Query Conservation																																					.	.	.	.									.	.	.	.																												.	.
Alig confidence								.	.	.	.	.																									.	.	.	.									.	.	.	.																												.	.
Template Conservation								.	.	.	.	.
Template Sequence		F	K	R	V	I	V	.	.	.	.	.	E	I	G	R	Y	I	V	A	P	S	G	Y	L	L	L	R	V	V	L	V	K	R	R	H	N	K	A	F	V	V	V	D	G	G	X	N	V	L	I	R	P	A	L	Y	S	A	Y	H	R	I	F	V	L	G	K	Q	G	K	E	X	R	A	D	V	V	G	P	L	C
Template Known Secondary structure			S					.	.	.	.	.								G	G	G														T	T							S			T	T	T							T									T	T					S								S	S	S
Template Predicted Secondary structure								.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.						.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
			326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	D	S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation		.
Alig confidence		.													.
Template Conservation															.
Template Sequence		E	S	G	D	V	I	A	Y	D	R	E	L	P	.	E	V	E	P	G	D	I	I	A	V	E	N	A	G	A	Y	G	Y	T	X	S
Template Known Secondary structure		S	T	T										S	.				T	T						S	S		S	S	S	S	G	G	G
Template Predicted Secondary structure															.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions