Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 14 Aligned Residues 321 % Identity 19% Template c2vd9A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from bacillus2 anthracis (ba0252) with bound l-ala-p Resolution 2.1 Å

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		28	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure							.																																.	.	.
Query SS confidence							.																																.	.	.
Query Sequence		P	D	S	W	V	.	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	.	.	.	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G
Query Conservation							.																																.	.	.
Alig confidence							.																			.	.												.	.	.											.																													.
Template Conservation																										.	.																									.																													.
Template Sequence		R	D	T	W	V	E	V	D	L	D	A	I	Y	N	N	V	T	H	I	E	F	I	P	S	.	.	D	V	E	I	F	A	V	V	K	G	N	A	Y	G	H	D	Y	V	P	V	A	I	A	L	.	E	A	G	A	T	R	L	A	V	A	F	L	D	E	A	L	V	L	R	R	A	G	I	T	A	P	I	L	.
Template Known Secondary structure		S	S																				S		T	.	.	T														T								T	T	.	T	T	T							S	S										T	T			S				.
Template Predicted Secondary structure																										.	.																									.																													.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P
Query Conservation
Alig confidence																				.														.	.	.	.																					.	.	.	.	.	.									.	.
Template Conservation																				.														.	.	.	.																					.	.	.	.	.	.									.	.
Template Sequence		V	L	G	P	S	P	P	R	D	I	N	V	A	A	E	N	D	V	.	A	L	T	V	F	Q	E	W	V	D	E	A	I	.	.	.	.	L	W	D	G	S	S	T	M	Y	H	I	N	F	D	S	G	M	G	R	I	.	.	.	.	.	.	G	I	R	E	R	E	L	G	.	.	F	L	S	L	E	G	A	P
Template Known Secondary structure				S				G	G	G							T	T		.			B											.	.	.	.				S	S								B		S	S			S	S	.	.	.	.	.	.	S	B							.	.				G	G	G		T
Template Predicted Secondary structure																				.														.	.	.	.																					.	.	.	.	.	.									.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T	I
Query Conservation
Alig confidence												.	.													.														.	.																.	.	.
Template Conservation												.	.													.														.	.																.	.	.
Template Sequence		F	L	E	L	E	G	V	Y	T	H	.	.	F	A	T	A	D	E	V	E	T	S	Y	F	.	D	Q	Y	N	T	F	L	E	Q	L	S	W	L	.	.	E	F	G	V	D	P	F	V	H	T	A	N	S	A	A	.	.	.	T	L	R	F	Q	G	I	T	F	N	A	V	R	I	G	I	A	M	Y	G	L	S
Template Known Secondary structure		T										.	.		S	S	T	T	S	S	S		T	T	T	.														.	.			S													.	.	.					S	S			T	T					S	T	T	T	T	T
Template Predicted Secondary structure												.	.													.														.	.																.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		264	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.											320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.								.	.																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.								.	.																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	N	Q	Q	G	D	Q	P	.	.	E	R	I	A	M	L	W	.	.	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	.	.	.	.	.	.	.	.	.	.	T	N	L	K	T	V	D	D	S	S
Query Conservation											.	.								.	.																																									.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.								.	.								.																	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																													.																	.
Template Sequence		P	S	V	E	I	R	P	F	L	P	F	L	E	P	A	L	S	L	H	T	V	A	H	I	K	Q	V	.	I	G	D	G	I	S	Y	N	V	T	Y	R	T	T	E	E	.	W	I	A	T	V	A	I	G	Y	A	D	G	W	L	R	R	L	Q	G	F	E	V	L	V	N	G	R	V	P	I	V	G	R	V	T
Template Known Secondary structure		S		T	T	T	G	G	G																				.						S	G	G	G								.						S			G	G	G	T			G	G	G	T	T				B	S								S
Template Predicted Secondary structure																													.																	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		I	D	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I	H	R	G	E	P	E	I	V	G	R	Y	D	S	L	G	N
Query Conservation				.
Alig confidence				.																																						.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		M	D	Q	F	M	I	H	L	P	C	E	V	P	L	G	T	V	T	L	I	G	R	Q	G	D	E	Y	I	S	A	T	E	V	A	E	Y	S	G	T	I	.	.	.	.	.	.	.	.	N	Y	E	I	I	T	T
Template Known Secondary structure		S	S							S	S				T	T									T	T													T	S		.	.	.	.	.	.	.	.							T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.									.	.	.	360	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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