Phyre 2 alignment of P45550 with c2qghA

Job Description P45550
Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012

Rank 24 Aligned Residues 330

% Identity 10% Template c2qghA_

PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	L	W	Q	Q	G	K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P
Query Conservation
Alig confidence						.	.																																								.														.
Template Conservation						.	.																																								.														.
Template Sequence	E	L	F	Q	T	.	.	H	K	T	P	F	Y	L	Y	D	F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	K	S	L	I	C	Y	A	L	K	A	N	S	.	N	L	S	I	L	S	L	L	A	H	L	E	S	.	G	A	D	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I	K
Template Known Secondary structure						.	.			S	S																			T	T		S	S								G	G	G			.											T	T		.					S	S										T	T
Template Predicted Secondary structure						.	.																																								.														.
Template SS confidence
	6	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	99	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																																												.	.	.	.	.	.	.	.
Query SS confidence			.																																																												.	.	.	.	.	.	.	.
Query Sequence	V	A	.	H	Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	.	.	.	.	.	.	.	.	Y	P	G	Q	E	S	G	F	A	L
Query Conservation			.																																																												.	.	.	.	.	.	.	.
Alig confidence			.																																																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	Y	R	I	V	F	S	G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G	E
Template Known Secondary structure	G	G	G						T	T												T	T		S						S															T									B								S		G	G	G	B			S	T	T	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G
Query Conservation
Alig confidence																									.	.	.																																											.	.	.
Template Conservation																									.	.	.																																											.	.	.
Template Sequence	K	E	A	L	E	M	F	L	W	A	K	K	S	A	F	L	E	P	V	S	V	H	F	H	.	.	.	I	G	S	Q	L	L	D	L	E	P	I	I	E	A	S	Q	K	V	A	K	I	A	K	S	L	I	A	L	G	I	D	L	R	F	F	D	V	G	G	G	I	G	.	.	.	V	S	Y	E	N	E	E	T
Template Known Secondary structure														S	S										.	.	.		B	S	S	B																							T	T												B		.	.	.			T	T	S
Template Predicted Secondary structure																									.	.	.																																											.	.	.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.

	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.							.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.									.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence	V	T	H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	.	.	.	.	.	.	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	.	.	.	.	.	.	.	.	H	A	Q	H	A	L	V	F	T	P	E	N	Q
Query Conservation																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	K	L	Y	D	Y	A	Q	G	I	L	N	A	L	Q	G	L	D	L	T	I	I	C	E	P	G	R	S	I	V	A	E	S	G	E	L	I	T	Q	V	L	Y	E	K	K	N	K	R	F	V	I	V	D	A	G	M	N	D	F	L	R	P	S	L	Y	H	A	K	H	A	I	R	V	I	T	P	S	E	I	S
Template Known Secondary structure														T	T	T															T	T	T																				S			T	T	T																	S
Template Predicted Secondary structure
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	T	E	T	N	L	K	T	V	D	D	S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence	P	C	D	V	V	G	P	V	C	E	S	S	D	T	F	L	K	D	A	H	L	.	P	E	L	E	P	G	D	K	I	A	I	E	K	V	G	A	Y	G	S	S	M	A
Template Known Secondary structure							S	S	S	S	T	T										.					T	T							S		S	S	S	S	G	G	G
Template Predicted Secondary structure																						.
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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