Job Description P45550 Confidence 99.97% Date Thu Jan 5 12:03:07 GMT 2012 Rank 32 Aligned Residues 296 % Identity 18% Template c2pljA_ PDB info PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus Resolution 1.70 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	S	A	A	L	S	L	W	Q	Q	G	K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V
Query Conservation
Alig confidence														.	.	.	.	.																						.	.														.														.
Template Conservation														.	.	.	.	.																						.	.														.														.
Template Sequence		H	L	I	E	A	S	V	E	Q	F	G	A	.	.	.	.	.	P	L	L	L	L	D	C	D	V	I	R	Q	Q	Y	R	A	L	K	N	A	L	.	.	P	N	V	T	L	H	Y	A	L	K	P	L	P	.	H	P	V	V	V	R	T	L	L	A	E	G	A	.	S	F	D	L	A	T	T	G	E	V	E	L
Template Known Secondary structure													S	.	.	.	.	.	S																				S	.	.	T	T							S	T	T			.												T		.						S
Template Predicted Secondary structure														.	.	.	.	.																						.	.														.														.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		M	R	R	A	G	L	P	V	A	H	Q	G	H	L	V	Q	.	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K
Query Conservation																		.
Alig confidence																		.																													.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		V	A	S	E	G	V	P	A	D	L	T	I	H	T	H	P	I	K	R	D	A	D	I	R	D	A	L	A	Y	G	C	N	V	F	V	V	D	N	L	N	E	L	E	K	F	.	.	.	.	K	A	Y	R	D	D	V	E	L	L	V	R	L	S	F	S	K	.	.	.	.	.	.	.	K	F	G	C	S	P	E
Template Known Secondary structure					T	T			G	G	G						S	S													T								S						T	T	.	.	.	.	G	G	G	T	T	T							B					.	.	.	.	.	.	.		S		B
Template Predicted Secondary structure																																															.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	.	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.												.	.												.																		.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.												.	.												.
Template Sequence		Q	A	L	V	I	I	E	T	A	K	E	.	W	N	I	R	I	K	G	L	S	F	H	.	.	V	G	S	Q	T	T	N	P	N	K	Y	.	V	E	A	I	H	T	C	R	H	V	M	E	Q	V	V	E	R	G	L	P	A	L	S	T	L	D	I	G	G	G	F	P	V	N	Y	T	Q	Q	V	M	P	I	D
Template Known Secondary structure													.	T	T										.	.			T	T				T				.																	T	T																	S	S	S
Template Predicted Secondary structure													.												.	.												.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
								239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	C	A	P	I	N	E	A	L	S	L	L	P	E	T	V	H	V	L	A	E	P	G	R	F	I	C	A	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	V	T	S	V	A	S	V	M	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	A	E	R	E	G	Q	I	W	Y	Y	L	D	D	G
Template Known Secondary structure												T	T	S		T	T													G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G											.	.	.	.	.	.	.	.	.	.	.	.				T	T							S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.														.	.	280	.	.	.	.	.	.	.	.	.													290	.	.	.	.	.	.	.	.	.	300	.	.	.
		313	.	.	.	.	.	.	320																											.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T	V	D	D	S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																																																			.	.	.
Template Sequence		I	Y	G	S	F	S	G	L	M	F	D	D	A	R	Y	P	L	T	T	I	K	Q	G	G	E	L	I	P	S	V	L	S	G	P	T	C	D	S	V	D	V	I	A	E	N	I	L	L	P	.	.	.	K	L	N	N	G	D	L	V	I	G	R	T	M	G	A	Y	T	S	A	T	A
Template Known Secondary structure		T	T	T	G	G	G					S									S			S	S										S	S	S		T	T											.	.	.				T	T						S	S		S	S	S	S	G	G	G
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions