Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 22 Aligned Residues 308 % Identity 16% Template c2p3eA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus Resolution 1.99 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q	G	H	L	V
Query Conservation
Alig confidence																										.	.													.														.
Template Conservation																										.	.													.														.
Template Sequence		G	T	P	L	Y	V	Y	S	S	N	F	I	K	E	R	F	E	A	Y	R	K	A	F	P	.	.	D	A	L	I	C	Y	A	V	K	A	N	F	.	N	P	H	L	V	K	L	L	G	E	L	G	A	.	G	A	D	I	V	S	G	G	E	L	Y	L	A	K	K	A	G	I	P	P	E	R	I	V	Y	A	G
Template Known Secondary structure			S	S																				S	T	.	.	T	S						G	G	G			.											T	T		.					S	S										T	T			G	G	G					S
Template Predicted Secondary structure																										.	.													.														.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
			107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L
Query Conservation		.
Alig confidence		.																																																	.	.				.	.	.	.	.	.
Template Conservation																																																			.	.				.	.	.	.	.	.
Template Sequence		V	G	K	T	E	K	E	L	T	D	A	V	D	S	E	I	L	M	F	N	V	E	S	R	Q	E	L	D	V	L	N	E	I	A	G	K	L	G	K	K	A	R	I	A	I	R	V	N	P	.	.	S	K	F	.	.	.	.	.	.	G	V	D	I	R	E	A	Q	K	E	Y	E	Y	A	S	K	L	E	N	L
Template Known Secondary structure		S													T	T		S																					T												.	.			S	.	.	.	.	.	.				G	G	G										T		T	T
Template Predicted Secondary structure																																																			.	.				.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.																.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	T	S	L	P	L	L	A	Q	Y	G	V
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		E	I	V	G	I	H	C	H	.	.	.	I	G	S	Q	I	L	D	I	S	P	Y	R	E	A	V	E	K	V	V	S	L	Y	E	S	L	T	Q	K	G	F	D	I	K	Y	L	D	I	G	G	G	L	G	I	K	Y	K	P	E	D	K	E	P	A	P	Q	D	L	A	D	L	L	K	D	L	L	V	K	A	K
Template Known Secondary structure										.	.	.			S	S	B	S	S		T																			T	T												B					S	T	T														T	T	T				S
Template Predicted Secondary structure										.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	L	E	P	G	R	S	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	G	I	L	I	T	Q	V	Q	F	L	K	.	.	.	.	.	.	.	.	.	.	.	.	D	K	G	S	K	H	F	I	I	V	D	A	G	M	N	D	L	I	R	P	S	I	Y	N	A	Y	H	H	I	I	P
Template Known Secondary structure							S					G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G												.	.	.	.	.	.	.	.	.	.	.	.			T	T							S			T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.														.	.	.	290	.	.	.	.	.	.	.	.	.													300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
												320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	T	N	L	K	T	V	D	D	S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I	H	R	G	E	P	E	I	V	G	R	Y	D
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																			.											.							.													.	.
Template Conservation																														.											.							.													.	.
Template Sequence		V	E	T	K	E	V	V	A	D	I	V	G	P	I	C	E	T	G	D	F	L	A	L	D	R	E	I	E	.	E	V	Q	R	G	E	Y	L	A	V	.	L	S	A	G	A	Y	.	G	F	A	M	S	S	H	Y	N	M	R	P	.	.	R	A	A	E	V	L	V	E	N
Template Known Secondary structure		S	B											S	S	S	S	T	T											.				T	T						.		S		T	T	T	.	T	G	G	G				G	G	G			.	.									T
Template Predicted Secondary structure																														.											.							.													.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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