Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 10 Aligned Residues 322 % Identity 15% Template c2odoC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase Resolution 2.80 Å

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		27	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure								.																																.	.	.
Query SS confidence								.																																.	.	.
Query Sequence		A	P	D	S	W	V	.	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	.	.	.	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H	Q
Query Conservation								.																																.	.	.
Alig confidence								.																		.	.	.						.						.	.	.											.
Template Conservation																										.	.	.						.																			.
Template Sequence		M	R	P	A	R	A	L	I	D	L	Q	A	L	R	H	N	Y	Q	L	A	R	E	V	T	.	.	.	G	A	K	A	L	.	A	V	I	A	D	A	Y	G	H	G	A	V	R	C	A	Q	A	L	.	E	A	E	A	D	G	F	A	V	A	C	I	E	E	A	L	E	L	R	A	A	G	I	R	A	P	I	L
Template Known Secondary structure																										.	.	.		S				.									T										.	G	G	G		S					S	S										T	T			S
Template Predicted Secondary structure																										.	.	.						.																			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L
Query Conservation
Alig confidence																					.																.	.	.																				.	.	.	.	.	.
Template Conservation																					.																.	.	.																				.	.	.	.	.	.
Template Sequence		L	L	E	G	F	F	E	A	D	E	L	P	L	I	V	E	H	D	F	.	W	C	V	V	H	S	L	W	Q	L	D	A	I	E	Q	.	.	.	A	R	L	A	K	P	I	H	V	W	L	L	D	S	G	M	H	R	V	.	.	.	.	.	.	G	L	H	P	N	D	Y	K	A	A	Y	Q	R	L	Q	A	S
Template Known Secondary structure			T	T			S	S	G	G	G							T	T		.						S										.	.	.	S			S	S									S	S	S		S	S	.	.	.	.	.	.																T	S
Template Predicted Secondary structure																					.																.	.	.																				.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T
Query Conservation
Alig confidence													.	.																											.	.	.	.	.	.												.	.	.
Template Conservation													.	.																											.	.	.	.	.	.												.	.	.
Template Sequence		A	N	V	A	K	I	V	L	M	S	H	.	.	F	A	R	A	D	E	L	D	C	T	R	S	V	E	Q	V	A	V	F	L	G	A	R	A	D	L	.	.	.	.	.	.	T	A	E	I	S	L	R	N	S	P	A	.	.	.	V	L	G	W	P	R	V	P	S	D	W	V	R	P	G	L	M	L	Y	G	S
Template Known Secondary structure		S	S										.	.		S	S	T	T		S	S																T	T		.	.	.	.	.	.												.	.	.					T	T	S			S					S	G	G	G	G	T
Template Predicted Secondary structure													.	.																											.	.	.	.	.	.												.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		263	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320													.	.	.	.	.
Predicted Secondary structure									.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	A	N	Q	Q	G	.	.	D	Q	P	E	R	I	A	M	L	W	L	S	E	.	.	.	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T	V
Query Conservation									.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	F	D	E	P	Q	A	T	A	S	R	L	Q	P	V	M	T	L	E	S	K	V	I	C	V	R	E	L	P	A	G	E	P	V	G	Y	G	A	R	F	I	T	P	K	P	M	R	I	G	V	V	A	M	G	Y	A	D	G	Y	P	R	Q	A	P	T	G	T	P	V	F	V	D	G	V	R	S	Q	L	L
Template Known Secondary structure					S	S			T	T	G	G	G																			T	T		B		S	G	G	G			B		S	S								S			T	T	T	T			T	T			T	T						T	T					B
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		326	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.							.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.																																			.	.	.	.	.	.
Query SS confidence								.	.	.																																			.	.	.	.	.	.
Query Sequence		D	D	S	S	I	D	.	.	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	.	.	.	.	.	.	G	I	H	R	G	E	P	E	I	V	G	R	Y
Query Conservation								.	.	.																																			.	.	.	.	.	.
Alig confidence								.	.	.																						.	.	.											.	.	.	.	.	.							.
Template Conservation																																.	.	.																							.
Template Sequence		G	R	V	S	M	D	M	L	C	I	D	L	T	D	V	P	Q	A	G	L	G	S	T	V	E	L	W	G	K	N	.	.	.	I	L	A	S	E	V	A	T	A	A	D	T	I	P	Y	Q	I	F	C	N	L	K	.	R	V	P	R	L	Y
Template Known Secondary structure		S				S	S							S	S		T	T			T	T							S	S	S	.	.	.	S									T	T	S								T			.	S	S
Template Predicted Secondary structure																																.	.	.																							.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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