Job Description P45550 Confidence 99.96% Date Thu Jan 5 12:03:07 GMT 2012 Rank 33 Aligned Residues 315 % Identity 17% Template c2o0tB_ PDB info PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation Resolution 2.33 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	.	H	Q	G	H	L
Query Conservation																																																																												.
Alig confidence																											.								.					.														.																						.
Template Conservation																											.								.					.														.
Template Sequence		G	T	P	L	F	V	I	D	E	D	D	F	R	S	R	C	R	E	T	A	A	A	F	G	S	.	G	A	N	V	H	Y	A	.	A	A	F	L	.	C	S	E	V	A	R	W	I	S	E	E	G	L	.	C	L	D	V	C	T	G	G	E	L	A	V	A	L	H	A	S	F	P	P	E	R	I	T	L	H	G
Template Known Secondary structure			S	S																				T	T	S	.	G	G	G	B				.					.												T		.						S										T	T			G	G	G
Template Predicted Secondary structure																											.								.					.														.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70		.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.																	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.																	.	.
Query Sequence		V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	.	.	.	.	.	.	.	.	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.																	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		N	N	K	S	V	S	E	L	T	A	A	V	K	A	G	V	G	H	I	V	V	D	S	M	T	E	I	E	R	L	D	A	I	A	G	E	A	G	I	V	Q	D	V	L	V	R	L	T	V	G	V	E	A	H	T	H	E	F	I	S	T	A	H	E	D	Q	K	F	G	L	S	V	A	S	G	A	A	M	A	A
Template Known Secondary structure		S	S													T		S						S															T												S						T						S	S			S	S	S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																						.																											.
Query SS confidence																						.																											.
Query Sequence		V	A	E	I	Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	.	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	.	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A
Query Conservation																						.																											.
Alig confidence																						.																											.																							.	.
Template Conservation																																																																								.	.
Template Sequence		V	R	R	V	F	A	T	D	H	L	R	L	V	G	L	H	S	H	I	G	S	Q	I	F	D	V	D	G	F	E	L	A	A	H	R	V	I	G	L	L	R	D	V	V	G	E	F	G	P	E	K	T	A	Q	I	A	T	V	D	L	G	G	G	L	G	I	S	Y	L	P	.	.	S	D	D	P	P	P	I	A
Template Known Secondary structure									S	S																	S																										S	T	T										B				S	S	T	.	.	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.
		254	.	.	.	.	.	260														.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	G	H	A	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.
Template Sequence		E	L	A	A	K	L	G	T	I	V	S	D	E	S	T	A	V	G	L	P	T	P	K	L	V	V	E	P	G	R	A	I	A	G	P	G	T	I	T	L	Y	E	V	G	T	V	K	D	V	D	V	.	.	.	.	.	.	.	S	A	T	A	H	R	R	Y	V	S	V	D	G	G	M	S	D	N	I	R	T	A
Template Known Secondary structure																		T	T								B			S					S	T	T																.	.	.	.	.	.	.	S	S	S									S			T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
																						321	.	.	.	.	.	.	.	.	330			.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.		.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.		.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K	T	V	D	D	S	S	I	.	.	D	.	.	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.		.	.	.																		.
Template Conservation																																																							.
Template Sequence		L	Y	G	A	Q	Y	D	V	R	L	V	S	R	V	S	D	A	P	P	V	P	A	R	L	V	G	K	H	C	E	S	G	D	I	I	V	R	D	T	W	V	P	D	D	I	R	P	G	D	L	V	A	V	.	A	A	T	G	A	Y
Template Known Secondary structure													S	S				S										S	S	S	S	T	T											T	T			T	T						.	S			S	S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions