Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 3 Aligned Residues 340 % Identity 18% Template c1vftA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae Resolution 2.30 Å

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		26	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure									.																																.	.	.
Query SS confidence									.																																.	.	.
Query Sequence		I	A	P	D	S	W	V	.	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	.	.	.	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	H
Query Conservation									.																																.	.	.
Alig confidence									.																			.	.												.	.	.
Template Conservation																												.	.
Template Sequence		T	P	T	R	V	Y	A	E	I	D	L	D	A	V	R	A	N	V	R	A	L	R	A	R	A	P	.	.	R	S	A	L	M	A	V	V	K	S	N	A	Y	G	H	G	A	V	P	C	A	R	A	A	Q	E	A	G	A	A	W	L	G	T	A	T	P	E	E	A	L	E	L	R	A	A	G	I	Q	G	R	I
Template Known Secondary structure				S	S																			T	T	S	T	.	.	T	S													T													T		S					S	S										T	T			S
Template Predicted Secondary structure																												.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N
Query Conservation
Alig confidence			.																			.																													.												.	.	.
Template Conservation			.																			.																													.												.	.	.
Template Sequence		M	.	C	W	L	W	T	P	G	G	P	W	R	E	A	I	E	T	D	I	.	D	V	S	V	S	G	M	W	A	L	D	E	V	R	A	A	A	R	A	A	G	R	T	A	R	I	Q	L	.	A	D	T	G	L	G	R	N	G	C	Q	.	.	.	P	A	D	W	A	E	L	V	G	A	A	V	A	A	Q	A
Template Known Secondary structure			.						T	T									T	T		.						S														T	T	S							.			S	S			S	S	S			.	.	.	G	G	G
Template Predicted Secondary structure			.																			.																													.												.	.	.
Template SS confidence
		82		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G
Query Conservation
Alig confidence														.	.																																												.	.	.
Template Conservation														.	.																																												.	.	.
Template Sequence		E	G	T	V	Q	V	T	G	V	W	S	H	.	.	F	A	C	A	D	E	P	G	H	P	S	I	R	L	Q	L	D	A	F	R	D	M	L	A	Y	A	E	K	E	G	V	D	P	E	V	R	H	I	A	N	S	P	A	.	.	.	T	L	T	L	P	E	T	H	F	D	L	V	R	T	G	L	A	V	Y	G
Template Known Secondary structure		T	T	S										.	.		S	S	T	T	S	T	T																					T	T				S										.	.	.					G	G	G		S	S						G	G	G	G	T
Template Predicted Secondary structure														.	.																																												.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		262	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320													.	.	.
Predicted Secondary structure										.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	P	A	N	Q	Q	G	.	.	.	D	Q	P	E	R	I	A	M	L	W	L	S	E	.	.	.	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	.	N	L	K
Query Conservation										.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	P	S	P	E	L	G	T	P	A	Q	L	G	L	R	P	A	M	T	L	R	A	S	L	A	L	V	K	T	V	P	A	G	H	G	V	S	Y	G	H	H	Y	V	T	E	S	E	T	H	L	A	L	V	P	A	G	Y	A	D	G	I	P	R	N	A	S	G	R	G	P	V	L	V	A	G	K	I	R	R
Template Known Secondary structure				S		G	G	G			T	T	T	T	T																			T	T				S	G	G	G					S	S	S							S			T	T	T	T			G	G	G	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		324	.	.	.	.	.	330	.		.	.	.	.	.		.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370							.	.	.	.	.	.	.	.
Predicted Secondary structure										.						.											.																									.	.	.	.	.	.
Query SS confidence										.						.											.																									.	.	.	.	.	.
Query Sequence		T	V	D	D	S	S	I	D	.	Y	T	L	P	L	.	A	G	E	F	P	V	S	S	A	V	.	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I	H	R	G	.	.	.	.	.	.	E	P	E	I	V	G	R	Y
Query Conservation										.						.											.																									.	.	.	.	.	.
Alig confidence										.						.											.																									.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	G	R	I	A	M	D	Q	F	V	V	D	L	G	E	D	L	A	E	A	G	D	E	A	V	I	L	G	D	A	E	R	G	E	P	T	A	E	D	W	A	Q	A	A	H	T	I	A	Y	E	I	V	T	R	I	G	G	R	V	P	R	V	Y
Template Known Secondary structure		B		S				S	S								T					T	T									G	G	G	T											T	T	S								T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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