Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 29 Aligned Residues 304 % Identity 13% Template c1njjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 Resolution 2.45 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	A	.	H	Q	G	H	L	V	Q
Query Conservation																																																																										.
Alig confidence																								.	.													.														.																						.
Template Conservation																								.	.													.														.
Template Sequence		P	F	F	V	A	D	L	G	D	I	V	R	K	H	E	T	W	K	K	C	L	P	.	.	R	V	T	P	F	Y	A	V	K	C	N	D	.	D	W	R	V	L	G	T	L	A	A	L	G	T	.	G	F	D	C	A	S	N	T	E	I	Q	R	V	R	G	I	G	V	P	P	E	K	I	I	Y	A	N	P	C
Template Known Secondary structure																							T	.	.	T							G	G	G			.											T	T		.						S										T	T			G	G	G						S	S
Template Predicted Secondary structure																								.	.													.														.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L	H	L
Query Conservation
Alig confidence																																					.	.	.	.	.	.												.	.	.	.	.	.																		.
Template Conservation																																					.	.	.	.	.	.												.	.	.	.	.	.																		.
Template Sequence		K	Q	I	S	H	I	R	Y	A	R	D	S	G	V	D	V	M	T	F	D	C	V	D	E	L	E	K	V	A	K	T	H	P	K	A	.	.	.	.	.	.	K	M	V	L	R	I	S	T	V	K	F	.	.	.	.	.	.	G	A	K	V	E	D	C	R	F	I	L	E	Q	A	K	K	L	.	N	I	D	V
Template Known Secondary structure														T								S												T	T		.	.	.	.	.	.						B					S	.	.	.	.	.	.		B		G	G	G											T	.	T
Template Predicted Secondary structure																																					.	.	.	.	.	.												.	.	.	.	.	.																		.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q
Query Conservation
Alig confidence								.	.										.																																		.	.	.
Template Conservation								.	.										.																																		.	.	.
Template Sequence		T	G	V	S	F	H	.	.	V	G	S	G	S	T	D	A	S	.	T	F	A	Q	A	I	S	D	S	R	F	V	F	D	M	G	T	E	L	G	F	N	M	H	I	L	D	I	G	G	G	F	P	.	.	.	G	T	R	D	A	P	L	K	F	E	E	I	A	G	V	I	N	N	A	L	E	K	H	F	P	P
Template Known Secondary structure								.	.			S			S		T		.																			T	T														.	.	.	S	S	T	T	S	S	S																	S
Template Predicted Secondary structure								.	.										.																																		.	.	.
Template SS confidence
		192	.	.	.	.	.			.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		268	.	270	.	.	.	.										.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.												320	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	D	Q	P	E	R	.	.	.	.	.	.	.	.	.	I	A	M	L	W	L	S	E	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	.	.	.	.	.	.	.	.	.	.	.	T	N	L	K	T	V	D	D
Query Conservation									.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.														.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		D	L	K	L	T	I	V	A	E	P	G	R	Y	Y	V	A	S	A	F	T	L	A	V	N	V	I	A	K	K	.	.	.	.	V	T	Q	S	F	M	Y	Y	V	N	D	G	V	Y	G	S	F	N	C	I	L	Y	D	H	A	V	V	R	P	L	P	Q	R	E	P	I	E	K	L	Y	P	S	S	V	W	G	P
Template Known Secondary structure			T	T								S					G	G	G												.	.	.	.	B				B					S			T	T	T	G	G	G					S									S	S														S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.					.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		328	.	330			.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.									.	.
Query SS confidence					.	.									.	.
Query Sequence		S	S	I	.	.	D	Y	T	L	P	L	A	G	.	.	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation					.	.									.	.
Alig confidence					.	.									.	.
Template Conservation
Template Sequence		T	C	D	G	L	D	Q	I	V	E	R	Y	Y	L	P	E	M	Q	V	G	E	W	L	L	F	E	D	M	G	A	Y	T	V	V	S	P
Template Known Secondary structure		S	S		T	T														T	T							S			S	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions