Job Description P45550 Confidence 100.00% Date Thu Jan 5 12:03:07 GMT 2012 Rank 2 Aligned Residues 337 % Identity 18% Template c1niuA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																																.	.	.
Query SS confidence											.																																.	.	.
Query Sequence		G	K	I	A	P	D	S	W	V	.	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	.	.	.	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V
Query Conservation											.																																.	.	.
Alig confidence											.																				.												.	.	.
Template Conservation																															.
Template Sequence		N	D	F	H	R	D	T	W	A	E	V	D	L	D	A	I	Y	D	N	V	E	N	L	R	R	L	L	P	D	.	D	T	H	I	M	A	V	V	K	A	N	A	Y	G	H	G	D	V	Q	V	A	R	T	A	L	E	A	G	A	S	R	L	A	V	A	F	L	D	E	A	L	A	L	R	E	K	G	I	E	A
Template Known Secondary structure						S	S																					S		T	.	T	S													T													T							S	S										T	T			S
Template Predicted Secondary structure																															.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I
Query Conservation
Alig confidence					.																			.																								.	.													.	.	.	.	.
Template Conservation					.																			.																								.	.													.	.	.	.	.
Template Sequence		P	I	L	.	V	L	G	A	S	R	P	A	D	A	A	L	A	A	Q	Q	R	I	.	A	L	T	V	F	R	S	D	W	L	E	E	A	S	A	L	Y	S	G	P	F	P	I	.	.	H	F	H	L	M	D	T	G	M	G	R	L	.	.	.	.	.	G	V	K	D	E	E	E	T	K	R	I	V	A	L	I
Template Known Secondary structure					.			S				G	G	G							T	T		.															T	T				S	S			.	.							S	S			S	S	.	.	.	.	.	S			S
Template Predicted Secondary structure					.																			.																								.	.													.	.	.	.	.
Template SS confidence
		81	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L
Query Conservation
Alig confidence																.	.																											.	.	.															.	.	.
Template Conservation																.	.																											.	.	.															.	.	.
Template Sequence		E	R	H	P	H	F	V	L	E	G	L	Y	T	H	.	.	F	A	T	A	D	E	V	N	T	D	Y	F	S	Y	Q	Y	T	R	F	L	H	M	L	E	W	L	.	.	.	P	S	R	P	P	L	V	H	C	A	N	S	A	A	.	.	.	S	L	R	F	P	D	R	T	F	N	M	V	R	F	G	I	A	M
Template Known Secondary structure				S	T	T										.	.		S	S	T	T	S	S																	T	T	S	.	.	.	S	S			S										.	.	.					G	G	G		T	T						G	G	G
Template Predicted Secondary structure																.	.																											.	.	.															.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320												.	.
Predicted Secondary structure												.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	T	I	P	A	N	Q	Q	G	.	.	.	D	Q	P	E	R	I	A	M	L	W	L	S	E	.	.	.	I	S	H	H	F	R	G	D	S	Y	C	Y	G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	I	T	E	T	.	.	.	.	.	.	.	.	.	.	.	N	L
Query Conservation												.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	L	A	P	S	P	G	I	K	P	L	L	P	Y	P	L	K	E	A	F	S	L	H	S	R	L	V	H	V	K	K	L	Q	P	G	E	K	V	S	Y	G	A	T	Y	T	A	Q	T	E	E	W	I	G	T	I	P	I	G	Y	A	D	G	W	L	R	R	L	Q	H	F	H	V	L	V	D	G	Q	K	A
Template Known Secondary structure		G	T			S		S	T	T	G	G	G		S	S																				T	T				S	G	G	G						S	S							S			G	G	G	T			G	G	G	G	G						T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		323	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370							.	.	.	.	.	.	.	.
Predicted Secondary structure											.																.																									.	.	.	.	.	.
Query SS confidence											.																.																									.	.	.	.	.	.
Query Sequence		K	T	V	D	D	S	S	I	D	.	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	.	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I	H	R	G	.	.	.	.	.	.	E	P	E	I	V	G	R	Y
Query Conservation											.																.																									.	.	.	.	.	.
Alig confidence											.																.																									.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	V	G	R	I	C	M	D	Q	C	M	I	R	L	P	G	P	L	P	V	G	T	K	V	T	L	I	G	R	Q	G	D	E	V	I	S	I	D	D	V	A	R	H	L	E	T	I	N	Y	E	V	P	C	T	I	S	Y	R	V	P	R	I	F
Template Known Secondary structure					S				S	S							S	S				T	T										T	T													T	S		T	T						S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions