Job Description P45550 Confidence 99.96% Date Thu Jan 5 12:03:07 GMT 2012 Rank 35 Aligned Residues 324 % Identity 15% Template c1knwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	V	E	A	L	K	R	Q	N	P	A	L	I	S	A	A	L	S	L	W	Q	Q	G	K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G
Query Conservation
Alig confidence																				.	.	.				.	.	.																							.	.	.	.	.											.														.
Template Conservation																				.	.	.				.	.	.																							.	.	.	.	.											.														.
Template Sequence		L	F	S	T	D	T	D	L	T	A	E	N	L	L	R	L	P	A	.	.	.	E	F	G	.	.	.	C	P	V	W	V	Y	D	A	Q	I	I	R	R	Q	I	A	A	L	K	Q	F	D	.	.	.	.	.	V	V	R	F	A	Q	K	A	C	S	.	N	I	H	I	L	R	L	M	R	E	Q	G	V	.	K
Template Known Secondary structure		T	T	T		S	S	S												.	.	.				.	.	.	S	S															T	T	T	T	S	S	.	.	.	.	.						G	G	G			.											T	T		.
Template Predicted Secondary structure																				.	.	.				.	.	.																							.	.	.	.	.											.														.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70		.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		I	V	A	V	D	Y	K	E	A	R	V	M	R	R	A	G	L	P	V	.	.	.	.	.	A	H	Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.																							.
Template Conservation																																																.
Template Sequence		V	D	S	V	S	L	G	E	I	E	R	A	L	A	A	G	Y	N	P	Q	T	H	P	D	D	I	V	F	T	A	D	V	I	D	Q	A	T	L	E	R	V	S	E	L	Q	I	.	P	V	N	A	G	S	V	D	M	L	D	Q	L	G	Q	V	S	P	G	H	R	V	W	L	R	V	N	P	G	F	G	H	G
Template Known Secondary structure						S										T	T			T	T	T		T	T	S						S														T		.					S	S											S	T	T										S			S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		156	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		D	D	F	L	.	.	.	.	Y	P	G	Q	E	S	G	F	A	L	K	V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																							.														.	.	.	.	.	.	.
Template Conservation																																.														.	.	.	.	.	.	.
Template Sequence		H	S	Q	K	T	N	T	G	G	E	N	S	K	H	G	I	W	Y	T	D	L	P	A	A	L	D	V	I	Q	R	.	H	H	L	Q	L	V	G	I	H	M	H	I	G	.	.	.	.	.	.	.	S	G	V	D	Y	A	H	L	E	Q	V	C	G	A	M	V	R	Q	V	I	E	F	G	Q	D	L	Q	A	I
Template Known Secondary structure			T	T	S			S	S	S	T	T				S			G	G	G											.	T	T												.	.	.	.	.	.	.		T	T																				T				S
Template Predicted Secondary structure																																.														.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.								.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		232	.	.	.																							.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		N	A	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	.	H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	S	H	H	F	R
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	G	G	G	L	S	V	P	Y	Q	Q	G	E	E	A	V	D	T	E	H	Y	Y	G	L	W	N	A	A	R	E	Q	I	A	R	H	L	G	H	P	V	K	L	E	I	E	P	G	R	F	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	V	L	I	T	Q	V	R	S	V	K	Q
Template Known Secondary structure												S	T	T																									T	S									S					G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.														.	.	.	.	280	.	.	.	.	.	.	.	.	.
		289	290					.	.	.	.	.	.								.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.												.	340	.	.	.	.	.
Predicted Secondary structure				.	.	.	.							.	.	.	.	.	.	.																			.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.							.	.	.	.	.	.	.																			.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	.	.	.	.	S	Y	C	Y	G	G	.	.	.	.	.	.	.	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	.	Q	K	I	T	E	T	N	L	K	T	V	D	D	S	S	I	D	Y	T	L	P	L	A	G	.	.	.	.	.	.	.	.	.	.	.	E	F	P	V	S	S	A
Query Conservation				.	.	.	.							.	.	.	.	.	.	.																			.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.							.	.	.	.	.	.	.																			.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	S	R	H	F	V	L	V	D	A	G	F	N	D	L	M	R	P	A	M	Y	G	S	Y	H	H	I	S	A	L	A	A	D	G	R	S	L	E	H	A	P	T	V	E	T	V	V	A	G	P	L	C	E	S	G	D	V	F	T	Q	Q	E	G	G	N	V	E	T	R	A	L	P	E	V	K	A	G	D	Y
Template Known Secondary structure			T	T							S			T	T	T	S																	T	T					T	T											S	S	S	S	T	T		B	S	S	B		T	T	S		B										T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	L	C	F	R	T	Q	I	F	V	T	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	L	H	D	T	G	A	Y	G	A	S	M	S
Template Known Secondary structure						S		S	S	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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