Job Description P45550 Confidence 99.94% Date Thu Jan 5 12:03:07 GMT 2012 Rank 38 Aligned Residues 337 % Identity 17% Template c1d7kB_ PDB info PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution Resolution 2.10 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	S	A	A	L	S	L	W	Q	Q	G	K	I	A	P	D	S	W	V	I	D	V	D	Q	I	L	E	N	G	K	R	L	I	E	T	A	R	L	Y	G	I	E	L	Y	L	M	T	K	Q	F	G	R	N	P	W	L	A	E	K	L	L	A	L	G	Y	S	G	I	V	A	V	D	Y	K	E	A	R	V
Query Conservation
Alig confidence																																									.	.								.					.														.
Template Conservation																																									.	.								.					.														.
Template Sequence		D	I	L	D	Q	K	I	N	E	V	S	S	S	D	D	K	D	A	F	Y	V	A	D	L	G	D	I	L	K	K	H	L	R	W	L	K	A	L	P	.	.	R	V	T	P	F	Y	A	.	V	C	N	D	.	S	K	A	I	V	K	T	L	A	A	T	G	T	.	G	F	D	C	A	S	K	T	E	I	Q	L
Template Known Secondary structure										T	T	T	T	S	S																									T	.	.	T							.					.										T	T	T		.						S
Template Predicted Secondary structure																																									.	.								.					.														.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.		.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.
		92	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		M	R	R	A	G	L	P	.	V	A	H	Q	G	H	L	V	Q	I	P	C	H	Q	V	A	D	A	V	E	Q	G	T	D	V	I	T	V	F	T	L	D	K	A	R	E	V	S	A	A	A	V	K	A	G	R	I	Q	S	V	L	L	K	V	Y	S	D	D	D	F	L	Y	P	G	Q	E	S	G	F	A	L	K
Query Conservation									.
Alig confidence									.																																																														.	.
Template Conservation																																																																							.	.
Template Sequence		V	Q	S	L	G	V	P	P	E	R	I	I	Y	A	N	P	C	K	Q	V	S	Q	I	K	Y	A	A	N	N	G	V	Q	M	M	T	F	D	S	E	V	E	L	M	K	V	A	R	A	H	P	K	A	K	L	V	L	R	I	A	T	D	D	S	K	A	V	C	R	L	.	.	S	V	K	F	G	A	T	L	R
Template Known Secondary structure				T	T	T			G	G	G						S	S												T	T								S												T	T							B				S			S	S			S	.	.	S		S	S		B
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	P	E	I	V	A	E	I	Q	N	L	P	G	L	H	L	A	G	L	T	H	F	P	C	L	L	W	D	E	A	V	G	K	V	L	P	T	P	N	L	H	T	L	I	Q	A	R	D	Q	L	A	K	S	G	I	A	L	E	Q	L	N	A	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.											.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.											.	.	.
Template Sequence		T	S	R	L	L	L	E	R	A	K	E	L	.	N	I	D	V	V	G	V	S	F	H	.	.	.	V	G	S	G	C	T	D	P	E	T	F	V	Q	A	I	S	D	A	R	C	V	F	D	M	G	A	E	V	G	F	S	M	Y	L	L	D	I	G	G	G	F	P	G	S	E	D	V	K	L	K	F	E	E	I
Template Known Secondary structure														.	T										.	.	.			S			S		T																			T	T	T														S	S	S		S	S	S
Template Predicted Secondary structure														.											.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
						236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																		.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	A	T	S	C	T	S	L	P	L	L	A	Q	Y	G	V	T	H	A	E	P	G	H	A	L	T	G	T	I	P	A	N	Q	Q	G	D	Q	P	E	R	I	A	M	L	W	L	S	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	H	H	F	R	G	D	S	Y	C	Y
Query Conservation		.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	V	I	N	P	A	L	D	K	Y	F	P	S	D	S	G	V	R	I	I	A	E	P	G	R	Y	Y	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	F	T	L	A	V	N	I	I	A	K	K	I	V	L	K	E	Q	S	S	E	Q	T	F	M	Y	Y	V	N	D	G	V	Y	G	S	F
Template Known Secondary structure													S		G	G	G									S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T																					S							S			T	T	T	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.														.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.							.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		G	G	G	Y	Y	R	R	G	H	A	Q	H	A	L	V	F	T	P	E	N	Q	K	.	.	.	.	.	.	I	T	E	T	N	L	K	T	V	D	D	S	S	I	D	Y	T	L	P	L	A	G	E	F	P	V	S	S	A	V	V	L	C	F	R	T	Q	I	F	V	T	R	S	D	V	V	L	V	S	G	I	H
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																				.	.	.																							.	.
Template Conservation																																																	.	.	.																							.	.
Template Sequence		N	C	I	L	Y	D	H	A	H	V	K	P	L	L	Q	K	R	P	K	P	D	E	R	Y	Y	S	S	S	I	W	G	P	T	C	D	G	L	D	R	I	V	E	R	C	D	L	P	.	.	.	E	M	H	V	G	D	W	M	L	F	E	N	M	G	A	Y	T	V	A	A	A	S	.	.	T	F	N	G	F	Q
Template Known Secondary structure		G					S										S				T	T											S	S	S		T	T											.	.	.				T	T							S			S	S	S	G	G	G			.	.		G	G	G
Template Predicted Secondary structure																																																	.	.	.																							.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.
		369	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	E	P	E	I	V	G	R	Y	D
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		R	.	.	P	T	I	Y	Y	V	M	S
Template Known Secondary structure			.	.
Template Predicted Secondary structure			.	.
Template SS confidence
		402			.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions