Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6B7
Confidence100.00%DateWed Jan 25 15:20:14 GMT 2012
Rank19Aligned Residues344
% Identity17%Templated2ch1a1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like
Resolution2.4

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1.... ....10.........20.........30.........40.........50.........60.........70. .......
Predicted Secondary structure 


.























.

Query SS confidence 




.

































































.






Query Sequence  MKLPI. YLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVF. TSGATES
Query Conservation      
.


 
        
 

                                
  

   
     
  .   

 
Alig confidence 




.




















............
































.






Template Conservation             

      
  
    ............                
  

   
       
   
 
 
Template Sequence  LIIPEKIMMGPGPSNCSKRVLTAMTNT. . . . . . . . . . . . VLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAG
Template Known Secondary structure 





B

SSSS



TTS
............


TT
T


S
SS
Template Predicted Secondary structure 













............













Template SS confidence 















































































   14.....20.........30.........40 .........50.........60.........70.........80.
 
   7980.........90.........100.........110.........120.........130.........140. ........150.......
Predicted Secondary structure 






















.














Query SS confidence 






























































.















Query Sequence  DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM. RDDTILVSIMHVNNEI
Query Conservation     

             
        
              
                    .                
Alig confidence 







....

















.































.















Template Conservation     
   
....   

 


         .        
     
        
   
  

                 
Template Sequence  MEAMLSNL. . . . LEEGDRVLIAVNGIWAER. AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSS
Template Known Secondary structure  ....

TT
SS.TT


TTS




SSTTT
Template Predicted Secondary structure  ....







.






















Template SS confidence 















































































   82....... 90.........100....... ..110.........120.........130.........140.........150......
 
   158.160.........170.........180.........190.........200.........210.........220.........230.....
Predicted Secondary structure 


































..
Query SS confidence 













































































. .
Query Sequence  GVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGH. .
Query Conservation       
                
                      
  
     
 
                     ..
Alig confidence 













































































..
Template Conservation 
                     
                               
 
                       
Template Sequence  GLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQVLGAPPGITPISISPKALDVIRNRRTKSKVFY
Template Known Secondary structure  T


TTTT

TTTBTTB


TTTTT










SS

T
SS

S
GG
Template Predicted Secondary structure 















































Template SS confidence 















































































   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   236...240.........250..... ....260.........270.........280.........290.........300
Predicted Secondary structure  ..............







.















Query SS confidence  . . . . . . . . . . . . . .



















.












































Query Sequence  . . . . . . . . . . . . . . ERGMRSGTLPVHQIVGMGEA. YRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNI
Query Conservation  ..............      

       
    .                         
                   
Alig confidence  ..............



















.












































Template Conservation                       
       

                             
   
               
Template Sequence  WDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTV
Template Known Secondary structure  G
TT
SSS









T

BSS
SGGGB
TT
Template Predicted Secondary structure 




























Template SS confidence 















































































   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   301.... ....310....... ..320.........330.........340.........350...... ...360.........370.....
Predicted Secondary structure  .



...

















.





Query SS confidence 




.











. . .






































.


















Query Sequence  LNVSF. NYVEGESLIMAL. . . KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS. LGRFTTEEEIDYTIELVRK
Query Conservation       .       
   
...    
  
                           



.     
 



  
  
  
Alig confidence 




.











...











...................







.


















Template Conservation                   
    

 
  
    ...................    


       
 


   
  
  
Template Sequence  TGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT. . . . . . . . . . . . . . . . . . . FGKAWRVGIMGECSTVQKIQFYLYGFKE
Template Known Secondary structure 

TT


B

B


GGG...................TTT

GGG
S
Template Predicted Secondary structure 











...................








Template SS confidence 















































































   318.320.........330.........340.........350 .........360.........370........
 
   376...380
Predicted Secondary structure 
Query SS confidence 




Query Sequence  SIGRL
Query Conservation   
  
Alig confidence 




Template Conservation   
   
Template Sequence  SLKAT
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 




   379380...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions