Phyre 2 alignment of P0A6B7 with c3nuiA

Job Description P0A6B7
Confidence 99.94% Date Wed Jan 25 15:20:14 GMT 2012

Rank 136 Aligned Residues 357

% Identity 15% Template c3nuiA_

PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence	Y	L	D	Y	S	A	T	.	.	.	.	.	.	T	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	G	A	D	P	R	E	I	V	F	T	S	G	A	T	E	S	D
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence	Y	L	D	A	N	S	G	L	W	N	M	V	A	G	F	D	H	K	G	L	I	D	A	A	K	A	Q	Y	E	R	F	P	G	Y	H	A	F	F	G	R	M	S	D	Q	T	V	.	.	.	.	.	.	.	M	L	S	E	K	L	V	E	V	S	P	F	D	S	G	R	V	F	Y	T	N	S	G	S	E	A	N
Template Known Secondary structure				T	T					T		T	T		S																						B	T	T	B							.	.	.	.	.	.	.										S	S		S	S							S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
	49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.								.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	L	A	I	K	G	A	A	N	F	.	.	.	.	.	Y	Q	K	K	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	N	G	I	I	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	T	M	V	K	M	L	W	F	L	H	A	A	E	G	K	P	Q	K	R	K	I	L	T	R	W	N	A	Y	H	G	V	T	A	V	S	A	S	M	T	G	K	P	Y	N	S	V	F	G	L	P	L	P	G	F	V	H	L	T	C	P	H	Y	W	R	Y	G	E	E	G	E	T	E	E	Q	F	V	A	R	L
Template Known Secondary structure														T	T		T	T								T	T					S	S							S			G	G	G	G	G	G	T		S		T	T															T	T
Template Predicted Secondary structure
Template SS confidence
	122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

						135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure	.	.	.	.	.																													.	.	.	.																												.	.	.	.	.
Query SS confidence	.	.	.	.	.																													.	.	.	.																												.	.	.	.	.
Query Sequence	.	.	.	.	.	K	E	L	E	A	A	M	R	D	D	T	I	L	V	S	I	M	H	V	N	N	E	I	G	V	V	Q	D	.	.	.	.	I	A	A	I	G	E	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	S	V	G	K	L	P	.	.	.	.	.	I	D	L	S	Q	L	K	V	D	L	M
Query Conservation	.	.	.	.	.																													.	.	.	.																												.	.	.	.	.
Alig confidence	.	.	.	.	.																													.	.	.	.																												.	.	.	.	.
Template Conservation
Template Sequence	A	R	E	L	E	E	T	I	Q	R	E	G	A	D	T	I	A	G	F	F	A	E	P	V	M	G	A	G	G	V	I	P	P	A	K	G	Y	F	Q	A	I	L	P	I	L	R	K	Y	D	I	P	V	I	S	D	E	V	I	C	G	F	G	R	T	G	N	T	W	G	C	V	T	Y	D	F	T	P	D	A	I
Template Known Secondary structure													G	G	G								S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S					T	T				S
Template Predicted Secondary structure
Template SS confidence
	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence	S	F	S	G	H	K	I	Y	G	P	K	G	I	G	A	L	Y	V	R	R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W	N	G
Query Conservation
Alig confidence																																							.	.
Template Conservation																																							.	.
Template Sequence	I	S	S	K	N	L	T	A	G	F	F	P	M	G	A	V	I	L	G	P	E	L	S	K	R	L	E	T	A	I	E	A	I	E	E	F	P	H	.	.	G	F	T	A	S	G	H	P	V	G	C	A	I	A	L	K	A	I	D	V	V	M	N	E	G	L	A	E	N	V	R	R	L	A	P	R	F	E	E	R
Template Known Secondary structure				G	G	G	G	T	T	S	S																							T	S			T	.	.	T																							S	S
Template Predicted Secondary structure																																							.	.
Template SS confidence
	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

	281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence	I	K	D	I	E	E	V	Y	L	N	G	D	L	E	H	G	A	P	N	I	L	N	V	S	F	N	Y	V	E	G	E	S	L	I	M	A	L	K	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R	F	S	L	G	R	F
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	K	H	I	A	E	R	P	N	I	G	E	Y	R	G	I	G	F	M	W	A	L	E	A	V	K	D	K	A	.	.	.	.	.	.	.	.	.	.	.	S	K	T	P	F	D	G	N	L	S	V	S	E	R	I	A	N	T	C	T	D	L	G	L	I	C	R	P	L	G	Q	S	V	V	L	C	P	P	F	I
Template Known Secondary structure					T	T	S	T	T								T	T								S	B	T	T	.	.	.	.	.	.	.	.	.	.	.	T	T	B				G	G	G													T	T							T	T								T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.												.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.

	361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	T	E	E	E	I	D	Y	T	I	E	L	V	R	K	S	I	G	R	L	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	T	E	A	Q	M	D	E	M	F	D	K	L	E	K	A	L	D	K	V	F	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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