Job Description P0A6B7 Confidence 99.94% Date Wed Jan 25 15:20:14 GMT 2012 Rank 140 Aligned Residues 336 % Identity 18% Template c3ndnC_ PDB info PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate Resolution 1.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	P	I	Y	L	D	Y	S	A	T	T	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	G	A	D	P	R	E	I	V	F	T	S	G	A	T	E	S	D	N
Query Conservation
Alig confidence									.	.	.																	.	.	.	.	.	.	.	.																																		.	.
Template Conservation									.	.	.																	.	.	.	.	.	.	.	.																																		.	.
Template Sequence		T	A	E	A	M	Y	L	.	.	.	T	S	G	Y	V	Y	G	S	A	A	V	A	E	K	S	F	.	.	.	.	.	.	.	.	A	G	E	L	D	H	Y	V	Y	S	R	Y	G	N	P	T	V	S	V	F	E	E	R	L	R	L	I	E	G	A	P	A	A	.	.	F	A	T	A	S	G	M	A	A	V	F
Template Known Secondary structure		S	S						.	.	.		S	B				S	S									.	.	.	.	.	.	.	.	T	T	S	S					B	T	T	T																	T		S			.	.				S	S
Template Predicted Secondary structure									.	.	.																	.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
		36	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		L	A	I	K	G	A	A	N	F	Y	Q	K	K	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	.	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	N	G	I	I	D	L	K	E	L	E	A	A	M	R	D	D	T	I	L	V	S	I	M	H	V	N	N	E	I	G	V
Query Conservation																																	.
Alig confidence								.	.	.	.																						.																	.	.	.	.	.
Template Conservation								.	.	.	.																																							.	.	.	.	.
Template Sequence		T	S	L	G	A	L	.	.	.	.	L	G	A	G	D	R	L	V	A	A	R	S	L	F	G	S	C	F	V	V	C	S	E	I	L	P	R	W	G	V	Q	T	V	F	V	D	G	D	.	.	.	.	.	D	L	S	Q	W	E	R	A	L	S	V	P	T	Q	A	V	F	F	E	T	P	S	N	P	M	Q	S
Template Known Secondary structure						T	T	.	.	.	.			T	T							S	S											T					T	T								T	T	.	.	.	.	.									T	T	S			S						S	S		T	T	T
Template Predicted Secondary structure								.	.	.	.																																							.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	Q	D	I	A	A	I	G	E	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	S	V	G	K	L	P	I	D	L	S	Q	L	K	V	D	L	M	S	F	S	G	H	K	I	Y	G	P	K	G	.	.	I	G	A	L	Y	V	R	R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R
Query Conservation																																																							.	.
Alig confidence																																				.																			.	.
Template Conservation																																				.
Template Sequence		L	V	D	I	A	A	V	T	E	L	A	H	A	A	G	A	K	V	V	L	D	N	V	F	A	T	P	L	L	Q	Q	G	F	P	.	L	G	V	D	V	V	V	Y	S	G	T	H	I	D	G	Q	G	R	V	L	G	G	A	I	L	G	D	R	E	Y	I	D	G	P	V	Q	K	L	M	R	H	T	G	P	A
Template Known Secondary structure															T	T								T	T	T								G	G	.	G	T		S										S		S	S																T
Template Predicted Secondary structure																																				.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.															.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W	N	G	I	K	D	I	E	E	V	Y	L	N	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	G	A	P	N	I	L	N	V
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	.	.	.	.	.	.	.	.	.	.	A	F	N	A	W	V	L	L	K	G	L	E	T	L	A	I	R	V	Q	H	S	N	A	S	A	Q	R	I	A	E	F	L	N	G	H	P	S	V	R	W	V	R	Y	P	Y	L	P	S	H	P	Q	Y	D	L	A	K	R	Q	M	S	G	G	G	T	V	V	T	F
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.																																		T		T	T							T	T	S	T	T	S	T	T									S	S			S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.											.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		304	.	.	.	.	.							310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.										.	.																.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.										.	.																.	.	.	.	.	.	.	.
Query Sequence		S	F	N	Y	V	E	.	.	.	.	.	.	G	E	S	L	I	M	A	L	K	.	.	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	.	.	.	.	.	.	.	.	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R	F	S	L	G	R	F	T	T	E	E	E	I	D
Query Conservation								.	.	.	.	.	.										.	.																.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.										.	.																.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		A	L	D	C	P	E	D	V	A	K	Q	R	A	F	E	V	L	D	K	M	R	L	I	D	I	S	N	N	L	G	D	A	K	S	L	V	T	H	P	A	T	T	T	H	R	A	M	G	P	E	G	R	A	A	I	G	L	G	D	.	.	.	.	G	V	V	R	I	S	V	G	L	E	D	T	D	D	L	I	A
Template Known Secondary structure				S	S		G	G	G													S	S	S				S			S		S	S						G	G	G	T	T	T	S	T	T							T	T	T			T	.	.	.	.	T								S	S
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		368	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	I	E	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	D	R	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions