Job Description P0A6B7 Confidence 99.93% Date Wed Jan 25 15:20:14 GMT 2012 Rank 152 Aligned Residues 349 % Identity 13% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		6	.	.	.	10	.	.	.	.	.	.						.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.													.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure													.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Query Sequence		Y	L	D	Y	S	A	T	T	P	V	D	.	.	.	.	.	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	.	.	.	.	.	.	.	.	.	.	.	.	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	.	.	.	.	.	.
Query Conservation													.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Alig confidence													.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	X	L	G	G	G	N	P	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	.	.	.	.	.	.	.	.	.	.	.	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W
Template Known Secondary structure						S																									S		T	T		S										S				T	T			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.												.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.						130
Predicted Secondary structure																																	.	.	.	.																								.	.	.														.	.	.	.	.
Query SS confidence																																	.	.	.	.																								.	.	.														.	.	.	.	.
Query Sequence		G	A	D	P	R	E	I	V	F	T	S	G	A	T	E	S	D	N	L	A	I	K	G	A	A	N	F	Y	Q	K	K	.	.	.	.	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	R	Q	L	E	R	.	.	.	E	G	F	E	V	T	Y	L	A	P	Q	R	N	.	.	.	.	.	G
Query Conservation																																	.	.	.	.																								.	.	.														.	.	.	.	.
Alig confidence																																	.	.	.	.																								.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		N	L	T	S	E	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y
Template Known Secondary structure					G	G	G					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		131	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																			.	.	.																								.	.	.	.	.
Query SS confidence														.	.	.																			.	.	.																								.	.	.	.	.
Query Sequence		I	I	D	L	K	E	L	E	A	A	M	R	.	.	.	D	D	T	I	L	V	S	I	M	H	V	N	N	E	I	G	V	V	.	.	.	Q	D	I	A	A	I	G	E	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	.	.	.	.	.	S	V	G	K	L	P	I	D	L	S	Q	L	K	V	D	L
Query Conservation														.	.	.																			.	.	.																								.	.	.	.	.
Alig confidence														.	.	.																			.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I
Template Known Secondary structure										T						T	T									S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S								T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		M	S	F	S	G	H	K	I	Y	G	P	K	.	G	I	G	A	L	Y	V	R	R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W
Query Conservation														.
Alig confidence														.																													.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		L	C	F	S	L	S	K	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	.	.	.	.	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V
Template Known Secondary structure						S	G	G	G	T		G	G	G																							T	S	S				.	.	.	.												T	S									T
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		279	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure											.	.																															.	.
Query SS confidence											.	.																															.	.
Query Sequence		N	G	I	K	D	I	E	E	V	.	.	Y	L	N	G	D	L	E	H	G	A	P	N	I	L	N	V	S	F	N	Y	V	E	G	E	S	L	I	M	A	L	.	.	K	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R
Query Conservation											.	.																															.	.
Alig confidence											.	.																															.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.
Template Sequence		K	L	L	K	Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	.	.	.	.	.	.	.	.	.	Y	Q	H	A	H	E	C	I	R
Template Known Secondary structure								S	S	S	S	S								B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S			T	T	.	.	.	.	.	.	.	.	.		G	G	G	G	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.										.	.	.	410	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	L	G	R	F	T	T	E	E	E	I	D	Y	T	I	E	L	V	R	K	S	I	G	R	L
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		X	S	I	A	A	.	.	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V	R	E	L
Template Known Secondary structure				S		S	.	.
Template Predicted Secondary structure							.	.
Template SS confidence
		416	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions