Job Description P0A6B7 Confidence 99.97% Date Wed Jan 25 15:20:14 GMT 2012 Rank 44 Aligned Residues 351 % Identity 19% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																		.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.
Query Sequence		Y	L	D	Y	S	A	T	T	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	G	A	D	P	R	E	I	.	.	.	.	.	V	F	T	S	G	A	T	E	S	D	N
Query Conservation																																																																		.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		N	L	A	S	F	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	.	.	.	.	.	.	.	N	K	N	Y	V	D	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E	A	I	M
Template Known Secondary structure		B	T	T			S															T	T	.	.	.	.	.	.	.	T		B	T	T		T	T	T																			T	T					T	T									S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80								.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		81	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																										.
Query SS confidence											.	.	.	.	.	.	.	.	.																																										.
Query Sequence		L	A	I	K	G	A	A	N	F	.	.	.	.	.	.	.	.	.	Y	Q	K	K	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	N	G	.	I	I	D	L	K	E	L	E	A	A	M	R	D	D	T	I	L	V	S	I
Query Conservation											.	.	.	.	.	.	.	.	.																																										.
Alig confidence											.	.	.	.	.	.	.	.	.																												.	.	.												.
Template Conservation																																															.	.	.
Template Sequence		L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	F	A	R	Y	F	E	V	.	.	.	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	E	N	T	I	C	V	A	A
Template Known Secondary structure																		T	T				S								T	T												T	T		.	.	.								B	T	T	B		S												T	T
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		M	H	V	N	N	E	I	G	V	V	Q	D	I	A	A	I	G	E	M	C	R	A	R	G	.	.	.	.	.	.	I	I	Y	H	V	D	A	T	Q	S	V	G	K	L	P	.	.	.	.	.	.	.	I	D	L	S	Q	L	K	V	D	L	M	S	F	S	G	H	K	I	Y	G	P	K	G	I	G	A	L	Y
Query Conservation																										.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	G	S	T	L	N	G	E	F	E	D	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W	V	I
Template Known Secondary structure			B	S		T	T	T			B																												T	T	G	G	G	T						S	S				S	T	T	S	T	T															S	S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		218	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		V	R	R	K	.	.	.	.	.	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W	N	G	I	K	D	I	E	E	V	Y	L	N	G	D
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.
Template Conservation
Template Sequence		W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R	F	N	I	V	S	K
Template Known Secondary structure			S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S																																						T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.											.	.
Query SS confidence																	.	.	.											.	.
Query Sequence		L	E	H	G	A	P	N	I	L	N	V	S	F	N	Y	.	.	.	V	E	G	E	S	L	I	M	A	L	.	.	K	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R	F	S	L	G	R	F	T	T	E	E	E	I	D
Query Conservation																	.	.	.											.	.
Alig confidence							.	.									.	.	.											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	G	V	P	.	.	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	Q	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T	L	A	E
Template Known Secondary structure		S	S	S	S	S	.	.							S	S		S	S												T	T	T		B								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		T	T										T	T
Template Predicted Secondary structure							.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.																	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	I	E	L	V	R	K	S	I	G	R	L	R	D	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	V	I	D	I	E	K	V	M	R	E	L	D	E	L	P
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions