Phyre 2 alignment of P0A6B7 with c3fkdC

Job Description P0A6B7
Confidence 99.95% Date Wed Jan 25 15:20:14 GMT 2012

Rank 103 Aligned Residues 311

% Identity 16% Template c3fkdC_

PDB info PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence	L	D	Y	S	A	T	T	.	.	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	G	A	D	P	R	E	I	V	F	T	S	G	A	T	E	S	D	N	L	A	I	K
Query Conservation								.	.
Alig confidence								.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	N	F	S	T	T	V	W	T	D	G	D	D	H	L	E	K	H	L	V	E	N	L	N	C	I	R	H	Y	P	E	P	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	R	Q	X	L	A	K	R	N	S	V	D	N	N	A	I	L	V	T	N	G	P	T	A	A	F	Y	Q	I	A	Q
Template Known Secondary structure				S			S															T	G	G	G	G	G	S				T	T			.	.	.	.	.	.	.	.	.	.	.	.	.										T	T			G	G	G					S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.														.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	A	N	F	Y	Q	K	K	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	N	G	I	I	D	L	K	E	L	E	A	A	M	R	D	D	T	I	L	V	S	I	M	H	V	N	N	E	I	G	V	V	Q	D	I	A
Query Conservation
Alig confidence			.	.	.	.	.	.															.	.	.																						.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.															.	.	.																						.	.	.	.	.	.	.
Template Sequence	A	F	.	.	.	.	.	.	R	G	S	R	S	L	I	A	I	P	S	F	A	E	.	.	.	Y	E	D	A	C	R	X	Y	E	H	E	V	C	F	Y	P	S	N	E	D	I	.	.	.	.	.	.	.	G	E	A	D	F	S	N	X	D	F	C	W	L	C	N	P	N	N	P	D	G	R	L	L	Q	R	T
Template Known Secondary structure		T	.	.	.	.	.	.	T	T								S					.	.	.								T	T								T	T	S		G	.	.	.	.	.	.	.	G	G	S			T	T		S						S	S		T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.															.	.	.																						.	.	.	.	.	.	.
Template SS confidence
	86	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

	165	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure					.																	.	.	.	.	.																													.	.
Query SS confidence					.																	.	.	.	.	.																													.	.
Query Sequence	A	I	G	E	.	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	S	.	.	.	.	.	V	G	K	L	P	I	D	L	S	Q	L	K	V	D	L	M	S	F	S	G	H	K	I	Y	G	P	K	G	.	.	I	G	A	L	Y	V	R	R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E
Query Conservation					.																	.	.	.	.	.																													.	.
Alig confidence					.																	.	.	.	.	.																													.	.
Template Conservation
Template Sequence	E	I	L	R	L	L	N	D	H	P	D	T	T	F	V	L	D	Q	S	Y	V	S	F	T	T	E	E	V	I	R	P	A	D	I	K	G	R	K	N	L	V	X	V	Y	S	F	S	H	A	Y	G	I	P	G	L	R	I	G	Y	I	V	A	N	K	D	F	X	K	R	V	A	A	F	S	T	P	W	A	V	N
Template Known Secondary structure										T	T	S							T	T	G	G	G		S	S					G	G	G	G	T	T		S	S							S	T	T	T	S	S		G	G	G																	T	T			T	T		S
Template Predicted Secondary structure
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W	N	G	I	K	D	I	E	E	V	Y	L	N	G	D	L	E	H	G	A	P	N	I	L	N	V	S	F	N	Y	V	E	G	E	S	L	I	M	A
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	A	L	A	I	E	A	A	K	F	I	L	I	H	P	A	Q	F	T	L	P	I	R	K	W	Q	R	N	T	V	D	F	I	T	A	L	N	R	L	D	G	V	E	V	.	.	.	H	P	S	G	T	T	F	F	L	L	R	L	K	K	G	T	A	A	E	L	K	K	Y	X
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.																																						S	T	T				.	.	.				S	S	S							S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template SS confidence
											230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

	317			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence	L	.	.	K	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R	F	S	L	G	R	F	T	T	E	E	E	I	D	Y	T	I	E	L	V	R	K	S	I	G	R
Query Conservation		.	.
Alig confidence		.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence	L	E	E	Y	N	X	L	I	R	D	A	S	N	F	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	E	S	Y	V	R	I	T	T	Q	.	.	.	R	P	A	Q	N	Q	L	F	I	K	A	L	E	T	F	L	E	K
Template Known Secondary structure			T	T								T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T								.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																		.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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