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Job DescriptionP0A6B7
Confidence99.94%DateWed Jan 25 15:20:14 GMT 2012
Rank128Aligned Residues340
% Identity19%Templatec3aemD_
PDB info PDB header:lyaseChain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN
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Template Sequence  HAYPIFQ. . . TSTFCFDSTQQGADLFMGKGEGH. IYSRLGNPT. . . . . . . VEQFEEMVCSIEGAAGS. . AAFGSGMGAIS
Template Known Secondary structure  SS




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   1522...... .1530.........1540.........1550. ........1560 .........1570....... ..1580........
 
   81........90.........100.........110... ......120.........130.........140.........150.........
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Query Sequence  LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ. LEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGV
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Template Sequence  SSTLAF. . . . LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS. . . . . DVEKVKAAWKPNTKMVYLESPANPTCK
Template Known Secondary structure  TTT....

TT
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TT

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TTT

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   15891590.... .....1600.........1610.........1620.........1630.. .......1640.........1650.........
 
   160.........170.........180.........190.........200.........210.. ....... 220.........230.....
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Query Sequence  VQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG. . . IGALYVR. RKPRVRIEAQMHGGGH
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Template Sequence  VSDIKGIAVVCHERGARLVVDATFTSPCFL. KPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGS
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   1660.........1670.........1680......... 1690.........1700.........1710.........1720.........1730........
 
   236...240.........250.........260.........270.........280.........290.... .....300.
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Query Sequence  ERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLE. . . . . . . . . . . . . . HGAPNIL
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Template Sequence  LMA. . . . . . . . . . . PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTF
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   17391740. ........1750.........1760.........1770.........1780.........1790.........1800.......
 
   302...... .310....... ..320.........330.........340......... 350.........360.........370....
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Query Sequence  NVSFNYV. EGESLIMAL. . KDLAVSSGSACTSASLEPSYVLRALGLNDELA. . . . HSSIRFSLGRFTTEEEIDYTIELVR
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Template Sequence  LFEMKSFEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE
Template Known Secondary structure  SSTS
SSS
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SS

TTTTTTTTS
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   1808.1810.........1820.........1830.........1840.........1850.........1860.........1870.........1880.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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