Job Description P0A6B7 Confidence 99.95% Date Wed Jan 25 15:20:14 GMT 2012 Rank 102 Aligned Residues 340 % Identity 16% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		P	I	Y	L	D	Y	S	A	T	T	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	G	A	.	D	P	R	E	I	V	F	T	S	G	A	T	E	S	D	N	L	A
Query Conservation																																																															.
Alig confidence																											.	.	.	.	.	.																															.
Template Conservation																											.	.	.	.	.	.
Template Sequence		P	D	C	I	A	H	L	H	T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	.	.	.	.	.	.	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G
Template Known Secondary structure		T	T	B		S	S	S																			.	.	.	.	.	.				T	T		G	G	G																			T	T			T	T							S	S
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.							.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
		83	.	.	.	.	.	.	90	.																	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.
Query Sequence		I	K	G	A	A	N	F	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	N	G	I	I	D	L	K	E	L	E	A	A	M	R	D	D	T	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.
Template Conservation
Template Sequence		L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A
Template Known Secondary structure																							S		T	T	G	G	G							T	T	S		T									T	T	S		G	G	G						B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
							146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																			.	.	.	.	.															.
Query SS confidence		.	.	.	.	.																																																			.	.	.	.	.															.
Query Sequence		.	.	.	.	.	I	L	V	S	I	M	H	V	N	N	E	I	G	V	V	Q	D	I	A	A	I	G	E	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	S	V	G	K	L	P	I	D	L	S	Q	L	.	.	.	.	.	K	V	D	L	M	S	F	S	G	H	K	I	Y	G	.	P	K	G	I	G
Query Conservation		.	.	.	.	.																																																			.	.	.	.	.															.
Alig confidence		.	.	.	.	.																																																			.	.	.	.	.															.
Template Conservation
Template Sequence		E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G
Template Known Secondary structure		T	T										B	S		T	T	T			B														T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	V	R	R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W	N	G	I	K	D	I	E	E	V	Y	L	N	G	D	L	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	G	G	G					T											T																									T		T	T					S			S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		796	.	.	.	800																.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
		295	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																.	.																																																		.
Query SS confidence																.	.																																																		.
Query Sequence		H	G	A	P	N	I	L	N	V	S	F	N	Y	V	.	.	E	G	E	S	L	I	M	A	L	K	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R	F	S	L	.	G	R	F	T	T	E	E	E	I	D	Y	T	I	E
Query Conservation																.	.																																																		.
Alig confidence		.	.	.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation		.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	L	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S
Template Known Secondary structure		.	.	.	S	S									S	S	S																	T	S		B					.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											T	T
Template Predicted Secondary structure		.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					885	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.														.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	K	S	I	G	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	N	X	L	A	V	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		949	950	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions