Job Description P0A6B7 Confidence 99.84% Date Wed Jan 25 15:20:14 GMT 2012 Rank 225 Aligned Residues 344 % Identity 17% Template c2cjdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase; PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form Resolution 2.00 Å

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		6	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																						.
Query SS confidence									.	.	.	.	.	.																																																						.
Query Sequence		Y	L	D	Y	S	A	T	.	.	.	.	.	.	T	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	G	A	D	.	P	R	E	I	V	F	T	S	G	A	T	E	S
Query Conservation									.	.	.	.	.	.																																																						.
Alig confidence									.	.	.	.	.	.																																.	.	.	.																			.
Template Conservation																																														.	.	.	.
Template Sequence		Y	L	D	M	F	T	F	V	A	S	S	A	L	G	M	N	P	P	A	L	V	D	D	R	E	F	H	A	E	L	M	Q	A	A	L	N	K	P	S	N	S	D	V	Y	.	.	.	.	S	V	A	M	A	R	F	V	E	T	F	A	R	V	L	G	D	P	A	L	P	H	L	F	F	V	E	G	G	A	L	A
Template Known Secondary structure					S	S					T		S	S		B	S						T													T					T	T	T			.	.	.	.																		T	T								S	S
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.												.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.									.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	N	L	A	I	K	G	A	A	N	F	Y	Q	K	K	G	.	.	.	.	.	.	.	.	.	.	.	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	.	.	.	.	.	.	.	.	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	N	A	L	K	A	A	F	D	W	K	S	R	H	N	Q	A	H	G	I	D	P	A	L	G	T	Q	V	L	H	L	R	G	A	F	H	G	R	S	G	Y	T	L	S	L	T	N	T	K	P	T	I	T	A	R	F	P	K	F	D	W	P	R	I	D	A	P	Y	M	R	P	G	L	D	E	P	A	M	A
Template Known Secondary structure																				T	T	S		T	T									T	T					S	S	T	T	G	G	G	T			S						T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
						129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																			.	.	.	.																							.	.	.
Query SS confidence		.	.	.	.																																			.	.	.	.																							.	.	.
Query Sequence		.	.	.	.	N	G	I	I	D	L	K	E	L	E	A	A	M	R	D	D	T	I	L	V	S	I	M	H	V	N	N	E	I	G	V	V	Q	D	.	.	.	.	I	A	A	I	G	E	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	S	.	.	.	V	G	K	L	P	I	D	L	S	Q	L	K	V
Query Conservation		.	.	.	.																																			.	.	.	.																							.	.	.
Alig confidence		.	.	.	.																																			.	.	.	.																							.	.	.
Template Conservation
Template Sequence		A	L	E	A	E	A	L	R	Q	A	R	A	A	F	E	T	R	P	H	D	I	A	C	F	V	A	E	P	I	Q	G	E	G	G	D	R	H	F	R	P	E	F	F	A	A	M	R	E	L	C	D	E	F	D	A	L	L	I	F	D	E	V	Q	T	G	C	G	L	T	G	T	A	W	A	Y	Q	Q	L	D	V
Template Known Secondary structure																		S	T	T	T								S			S	T	T	T																			T	T								T	T	T	T	T	T	T	T	S	S	S	S	T					T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	M	S	F	S	G	H	K	I	Y	G	P	K	G	I	G	A	L	Y	V	R	R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L
Query Conservation
Alig confidence														.	.	.
Template Conservation														.	.	.
Template Sequence		A	P	D	I	V	A	F	G	K	K	T	Q	.	.	.	V	C	G	V	M	A	G	R	R	V	D	E	V	A	D	N	V	F	A	V	P	S	R	L	N	S	T	W	G	G	N	L	T	D	M	V	R	A	R	R	I	L	E	V	I	E	A	E	G	L	F	E	R	A	V	Q	H	G	K	Y	L	R	A	R	L
Template Known Secondary structure				S						G	G	G	S	.	.	.	S							G	G	G	G	G	S	T	T		T	T	T	S	T	T	S	S			S	S	S	S																			T
Template Predicted Secondary structure														.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		W	N	G	I	K	D	I	E	E	V	Y	L	N	G	D	L	E	H	G	A	P	N	I	L	N	V	S	F	N	Y	V	E	G	E	S	L	I	M	A	L	.	.	.	K	D	L	A	V	S	S	G	S	A	C	T	S	A	S	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R
Query Conservation																																										.	.	.
Alig confidence														.	.	.																										.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	L	A	A	D	F	P	A	V	V	L	.	.	.	D	P	R	G	R	G	L	M	C	A	F	S	L	P	T	T	A	D	R	D	E	L	I	R	Q	L	W	Q	R	A	V	I	V	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	T	V	R
Template Known Secondary structure								S	T	T	T	S		.	.	.						T	T							S	S														T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure														.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.																								.	.	.	420	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	L	G	R	F	T	T	E	E	E	I	D	Y	T	I	E	L	V	R	K	S	I	G	R	L	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	P	P	L	T	V	S	T	A	E	I	D	A	A	I	A	A	V	R	S	A	L	P	V	V	T	K
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions