Job Description P0A9M8 Confidence 99.47% Date Thu Jan 5 11:10:45 GMT 2012 Rank 42 Aligned Residues 265 % Identity 18% Template d1r8ka_ SCOP info Isocitrate/Isopropylmalate dehydrogenase-like Isocitrate/Isopropylmalate dehydrogenase-like PdxA-like Resolution 2.10

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		404	.	.	.	.	.	410	.	.	.						.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	R	I	V	L	P	E	G	D	.	.	.	.	.	E	P	R	T	V	K	A	A	A	I	C	A	E	R	G	I	A	T	C	V	L	L	G	N	P	A	E	I	N	R	V	A	A	S	Q	G	V	E	L	G	A	G	I	E	I	V	D	P	E	V	V	R	E	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.											.	.	.																											.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.																											.
Template Sequence		A	Q	R	V	V	I	T	P	G	E	P	A	G	S	G	P	D	L	V	V	Q	L	A	Q	R	.	.	.	A	W	P	I	E	L	V	V	C	A	D	G	A	L	L	T	E	R	A	A	X	L	G	L	P	L	.	S	L	L	P	Y	S	P	D	V	P	A	A	P	Q	P	A	G	T	L	T	L	L	P	V	S
Template Known Secondary structure												T	T	S	S									T	T	S	.	.	.			S	S																		T	T				.							T	T	S							T	T
Template Predicted Secondary structure																											.	.	.																											.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
																	467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	V	G	R	L	V	E	L	R	K	N	K	G	M	T	E	T	V	A	R	E	Q	L	E	D	N	V	V	L	G	T	L	M	L	E	Q	D	E	V	D	G	L	V	S	G	A	V	H	T	T	A	N	T	I	R	P	P	L	Q	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.												.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		L	R	A	P	A	I	S	G	Q	L	T	V	E	N	G	P	Y	V	V	E	T	L	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	D	G	C	L	N	G	E	F	A	A	L	I	T	G	P	V	.	H	K	G	V	I	N	D	A	G	I	S	F	T	G	H	T
Template Known Secondary structure			S	S			B	T	T	B			G	G	G											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S		S								.							T	T	T				S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
			527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.						.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.		580	.	.	.		.	.	.	.	.	.	590	.					.	.	.
Predicted Secondary structure		.																										.	.	.	.	.																													.					.									.	.	.	.
Query SS confidence		.																										.	.	.	.	.																													.					.									.	.	.	.
Query Sequence		.	L	I	K	T	A	P	G	S	S	L	V	S	S	V	F	F	M	L	L	P	E	Q	V	Y	V	.	.	.	.	.	Y	G	D	C	A	I	N	P	D	P	T	A	E	Q	L	A	E	I	A	I	Q	S	A	D	S	A	A	A	.	F	G	I	E	.	P	R	V	A	M	L	S	Y	.	.	.	.	S	T	G
Query Conservation		.																										.	.	.	.	.																													.					.									.	.	.	.
Alig confidence		.																										.	.	.	.	.									.	.																			.					.									.	.	.	.
Template Conservation																																									.	.
Template Sequence		E	F	F	E	E	R	S	Q	A	K	K	V	V	X	X	L	A	T	E	E	L	R	V	A	L	A	T	T	H	L	P	L	R	A	I	A	D	A	I	.	.	T	P	A	L	L	H	E	V	I	A	I	L	H	H	D	L	R	T	K	F	G	I	A	E	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G
Template Known Secondary structure								T	T		S									S	S						S	S		S											.	.																			T	S			S	S								S	S	G	G	G	G	G	G
Template Predicted Secondary structure																																									.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	A	G	S	D	V	E	K	V	R	E	A	T	R	L	A	Q	E	K	R	P	D	L	M	I	D	G	P	L	Q	Y	D	A	A	V	M	A	D	V	A	K	S	K	A	P	N	S	P	V	A	G	R	A	T	V	F	I	F	P	D	L	N	T	G	N	T	T	Y	K	A	V	Q	R	S	A	D	L	I
Query Conservation
Alig confidence																							.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	X	G	T	E	E	I	D	T	I	I	P	V	L	D	E	L	R	A	Q	.	.	G	X	K	L	N	G	P	L	P	A	D	T	L	F	Q	P	K	Y	.	.	.	.	.	.	.	.	.	.	L	D	N	A	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	Q	G	F	G	R	G	V	N
Template Known Secondary structure		G	T	T		S					T										T	T	.	.	T													S	S				.	.	.	.	.	.	.	.	.	.		T	T		S					S	S													T	T
Template Predicted Secondary structure																							.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.											.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.													.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	G	P	M	L	Q	G	M	R	K	P	V	N	D	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	G	A	L	V	D	D	I	V	Y	T	I	A	L	T	A	I	Q	S	A	Q	Q	Q
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.			.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.			.	.
Template Sequence		I	T	L	.	.	.	.	G	L	.	.	P	F	I	R	T	S	V	D	H	G	T	A	L	E	L	A	G	R	G	K	A	D	V	G	S	F	I	T	A	L	N	L	A	I	K	X	I	V	N	T	Q
Template Known Secondary structure					.	.	.	.	S	S	.	.	S	S						S	S				T	T	T	T	T	T	T																					T
Template Predicted Secondary structure					.	.	.	.			.	.
Template SS confidence
		284	.	.					.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions