Job Description P0A9M8 Confidence 99.01% Date Thu Jan 5 11:10:45 GMT 2012 Rank 60 Aligned Residues 190 % Identity 16% Template c3b9qA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana Resolution 1.75 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	I	M	L	I	P	T	G	T	S	V	G	L	T	S	V	S	L	G	V	I	R	A	M	E	R	K	G	V	R	L	S	V	F	K	P	I	A	Q	P	R	T	G	G	D	A	P	D	Q	T	T	T	I	V	R	A	N	S	S	T	T	T	A	A	E	P	L	K	M	S	Y	V	E	G	L	L	S	S	N
Query Conservation
Alig confidence										.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	I	M	I	V	G	V	.	N	G	G	G	K	T	T	S	L	G	K	L	A	H	R	L	K	N	E	G	T	K	V	L	M	A	A	G	D	T	F	R	A	A	A	S	D	Q	L	E	I	W	A	E	R	T	G	C	E	I	V	V	A	E	K	A	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	T	T	S																T	T											S																T												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																				.																															.	.	.	.	.	.	.
Query SS confidence																				.																															.	.	.	.	.	.	.
Query Sequence		Q	K	D	V	L	M	E	E	I	V	A	N	Y	H	A	N	T	K	.	D	A	E	V	V	L	V	E	G	L	V	P	T	R	K	H	Q	F	A	Q	S	L	N	Y	E	I	A	K	T	L	.	.	.	.	.	.	.	N	A	E	I	V	F	V	M	S	Q	G	T	D	T	P	E	Q	L	K	E	R	I	E	L
Query Conservation																				.																															.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.														.																															.	.	.	.	.	.	.														.	.
Template Conservation		.	.	.	.	.																																																																	.	.
Template Sequence		.	.	.	.	.	A	T	V	L	S	K	A	V	K	R	G	K	E	E	G	Y	D	V	V	L	C	D	T	S	G	R	L	H	T	N	Y	S	L	M	E	E	L	I	A	C	K	K	A	V	G	K	I	V	S	G	A	P	N	E	I	L	L	V	L	D	G	N	T	G	.	.	L	N	M	L	P	Q	A	R	E
Template Known Secondary structure		.	.	.	.	.														T	T		S										S	S																		T	T	S	T	T			S								G	G	G	G	.	.	G	G	G
Template Predicted Secondary structure		.	.	.	.	.																																																																	.	.
Template SS confidence
							233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	N	S	F	G	G	A	K	N	T	N	I	T	G	V	I	V	N	K	L	N	A	P	V	D	E	Q	G	R	T	R	P	D	L	S	E	I	F	D	D	S	S	K	A	K	V	N	N	V	D	P	A	K	L	Q	E	S	S	P	L	P	V	L	G	A	V	P	W	S	F	D	L	I	A	T	R	A	I	D
Query Conservation
Alig confidence							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	E	V	V	.	.	.	.	.	.	G	I	T	G	L	I	L	T	K	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	A	R	G	G	C	V	V	S	V	V	E	E	L	G	I	P	V	K	F	I	G	V	G	E	A	V	E	D	L	Q	P	F	D	P	E	A
Template Known Secondary structure						T	.	.	.	.	.	.											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S		T																				S	S	S	G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		306	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.																					.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		235	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	R	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	N	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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