Job Description P0A9M8 Confidence 98.96% Date Thu Jan 5 11:10:45 GMT 2012 Rank 63 Aligned Residues 171 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	I	M	L	I	P	T	G	T	S	V	G	L	T	S	V	S	L	G	V	I	R	A	M	E	R	K	G	V	R	L	S	V	F	K	P	I	A	Q	P	R	T	G	G	D	A	P	D	Q	T	T	T	I	V	R	A	N	S	S	T	T	T	A	A	E	P	L	K	M	S	Y	V	E	G	L	L	S	S	N
Query Conservation
Alig confidence											.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	I	L	L	V	G	I	Q	.	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K
Template Known Secondary structure										S	.	S	S	S	T	T																							S				T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	S	S							S	S							S	S	S
Template Predicted Secondary structure											.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.														.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		Q	K	D	V	L	M	E	E	I	V	A	N	Y	H	A	N	T	K	D	A	E	V	V	L	V	E	G	L	V	P	T	R	K	H	Q	F	A	Q	S	L	N	Y	E	I	A	K	T	L	N	A	E	.	I	V	F	V	M	S	Q	G	T	D	T	P	E	Q	L	K	E	R	I	E	L	T	R	N	S	F	G	G
Query Conservation																																																					.
Alig confidence																.	.	.	.																																		.											.	.																.
Template Conservation																.	.	.	.																																													.	.																.
Template Sequence		S	P	V	D	I	V	K	E	G	M	E	K	F	K	.	.	.	.	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	.	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	.
Template Known Secondary structure		S	S	S	T	T							T	T	S	.	.	.	.	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	.	.	G	G										T	T	S		.
Template Predicted Secondary structure																.	.	.	.																																													.	.																.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	N	T	N	I	T	G	V	I	V	N	K	L	N	A	P	V	D	E	Q	G	R	T	R	P	D	L	S	E	I	F	D	D	S	S	K	A	K	V	N	N	V	D	P	A	K	L	Q	E	S	S	P	L	P	V	L	G	A
Query Conservation
Alig confidence		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	S	A	V	A	E	T	K	A	P	I	K	F	I
Template Known Secondary structure		.	.	.	.	S									S	S	S		S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S
Template Predicted Secondary structure		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.																							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions