Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9M8
Confidence99.04%DateThu Jan 5 11:10:45 GMT 2012
Rank59Aligned Residues191
% Identity14%Templatec2iy3A_
PDB info PDB header:rna-bindingChain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
Resolution16.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  RIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRTGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSN
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Template Sequence  NLWFLVG. LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV. . . . . . . . . . . . . . . . . PVLEVM
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   99100..... ....110.........120.........130.........140.........150.... .....160
 
   83......90........ .100.........110.........120.........130. ........140.........150.........160
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Query Sequence  QKDVLMEEIVANYHAN. TKDAEVVLVEGLVPTRKHQFAQSLNYEIAKTLN. AEIVFVMSQGTDTPEQLKERIELTRNSFG
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Template Sequence  DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG. . QEALSVARAFDEKV.
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   161........170.........180.........190.........200.........210.........220... ......230.......
 
   161........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVLGAVPWSFDLIATRAIDMARHL
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Template Sequence  . . . . . GVTGLVLTKLDGDA. . . . . . . . . . . . . . . . . . . . RGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRI
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   238.240.........250. ........260.........270.........280.........290.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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