Job Description P0A9M8 Confidence 91.47% Date Thu Jan 5 11:10:45 GMT 2012 Rank 194 Aligned Residues 281 % Identity 14% Template c1zq1B_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi Resolution 3.00 Å

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.
Predicted Secondary structure																																	.																																									.	.	.	.	.	.
Query SS confidence																																	.																																									.	.	.	.	.	.
Query Sequence		L	K	M	S	Y	V	E	G	L	L	S	S	N	Q	K	D	V	L	M	E	E	I	V	A	N	Y	H	A	N	T	K	.	D	A	E	V	V	L	V	E	G	L	V	P	T	R	K	H	Q	F	A	Q	S	L	N	Y	E	I	A	K	T	L	N	A	E	I	V	F	V	M	S	Q	.	.	.	.	.	.	G	T
Query Conservation																																	.																																									.	.	.	.	.	.
Alig confidence																																	.								.	.																																.	.	.	.	.	.
Template Conservation																																									.	.
Template Sequence		V	K	P	K	L	L	F	N	I	F	S	E	D	X	K	P	K	H	W	V	K	I	A	H	E	V	A	K	A	L	N	S	G	D	Y	G	V	V	V	.	.	A	H	G	T	D	T	X	G	Y	T	A	A	A	L	S	F	X	L	R	N	L	G	K	P	V	V	L	V	G	A	Q	R	S	S	D	R	P	S	S
Template Known Secondary structure												G	G	G																				T		S					.	.				T	T	T												S	B	T			S								S	S		T	T	S	T	T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	E	Q	L	K	E	R	I	E	L	T	R	N	S	F	G	G	A	K	N	T	N	I	T	G	V	I	V	N	K	L	N	A	P	V	D	E	Q	G	R	T	R	P	D	L	S	E	I	F	D	D	S	S	K	A	K	V	N	N	V	D	P	A	K	L	Q	E	S	S	P	L	P	V	L	G	A	V	P
Query Conservation
Alig confidence															.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	A	X	N	L	I	C	S	V	R	X	A	.	.	.	.	.	T	S	E	V	A	E	V	X	V	V	X	H	G	E	T	G	D	T	Y	C	L	A	H	.	.	.	.	.	.	.	.	.	.	.	R	G	T	K	V	R	K	X	H	T	S	R	R	D	A	F	R	S	I	N	D	V	P	I	A	K	I	W
Template Known Secondary structure		S													.	.	.	.	.	T	S	S	B		S							S	S	S	S	S	S						.	.	.	.	.	.	.	.	.	.	.		T	T	S					S	S	S		G	G	G				S	S	S			S
Template Predicted Secondary structure															.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.												250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	S	F	D	L	I	A	T	R	A	I	D	M	A	R	H	L	N	A	T	I	I	N	E	G	D	I	N	T	R	R	V	K	S	V	T	F	C	A	R	S	I	P	H	M	L	E	H	F	R	A	G	S	L	L	V	T	S	A	D	R	P	D	V	L	V	A	A	C	L	A	A	M	N	G	V	E	I	G	A
Query Conservation
Alig confidence											.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation											.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Sequence		P	N	G	E	I	E	F	L	R	.	.	.	.	.	K	D	Y	R	K	R	S	D	E	E	V	E	V	D	D	K	I	E	E	K	V	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	V	Y	P	G	I	S	S	E	I	I	D	F	L	V	D	K	G	Y	K	.	.	.	.	.	G
Template Known Secondary structure		T	T	S					S		.	.	.	.	.	S		S		B			S				B												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S			T									T	T		S	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.						.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330						.
		303	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.									.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure					.	.																											.	.	.	.	.	.	.	.																.	.
Query SS confidence					.	.																											.	.	.	.	.	.	.	.																.	.
Query Sequence		L	L	L	.	.	T	G	G	Y	E	M	D	A	R	I	S	K	L	C	E	R	A	F	A	T	G	L	P	V	F	M	.	.	.	.	.	.	.	.	V	N	T	N	T	W	Q	T	S	L	S	L	Q	S	F	.	.	N	L	E	V	P	V	D	D	H	E	R	I	E	K	V	Q	E	Y	V	A	N	Y	I	N
Query Conservation					.	.																											.	.	.	.	.	.	.	.																.	.
Alig confidence					.	.																											.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		I	V	I	E	G	T	G	L	G	H	T	P	N	D	I	I	P	S	I	E	R	A	V	E	E	G	V	A	V	C	X	T	S	Q	C	I	Y	G	R	V	N	L	N	V	Y	S	T	G	R	K	L	L	K	A	G	V	I	P	C	E	D	X	L	P	E	T	A	Y	V	K	L	X	W	V	L	G	H	T	Q	N
Template Known Secondary structure							B	T	T	T	B			T	T	T										T	T								S	S	S	S	S				T	T	S	S									T	T					T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	W	I	E	S	L	T	A	T	S	E	R	S	R	R	L	S	P	P	A	F	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	E	V	R	K	X	X	L	T	N	Y	A	G	E	I	T	P	Y	T	R	F	D	T
Template Known Secondary structure										T	S		S	S	S	S	S		S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions