Job Description P0A9M8 Confidence 99.63% Date Thu Jan 5 11:10:45 GMT 2012 Rank 33 Aligned Residues 263 % Identity 15% Template c1yxoB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 Resolution 2.01 Å

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		406	.	.	.	410	.	.	.	.					.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	V	L	P	E	G	D	E	.	.	.	.	P	R	T	V	K	A	A	A	I	C	A	E	R	G	I	A	T	C	V	L	L	G	N	P	A	E	I	N	R	V	A	A	S	Q	G	V	E	L	G	A	G	I	E	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.					.	.																																		.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																																		.	.
Template Sequence		R	F	A	L	T	P	G	E	P	A	G	I	G	P	D	L	C	.	.	L	L	L	A	R	S	A	Q	P	H	P	L	I	A	I	A	S	R	T	L	L	Q	E	R	A	G	Q	L	G	L	A	I	D	.	.	L	K	D	V	S	P	A	A	W	P	E	R	P	A	K	A	G	Q	L	Y	V	W	D	T	P	L
Template Known Secondary structure									S	T	T	S	S						.	.			G	G	G	S			S	S																			T					.	.					B	T	T	B				S				T	T
Template Predicted Secondary structure																			.	.																																		.	.
Template SS confidence
		1004	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020			.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.			.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.
									460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																																				.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																																				.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	P	E	V	V	R	E	S	Y	V	G	R	L	V	E	L	R	K	N	K	G	M	T	E	T	V	A	R	E	Q	L	E	D	N	V	V	L	G	T	L	M	L	E	Q	D	E	V	D	G	L	V	S	G	A	V	H	T	T	A	N	T	I	R	P	P	L	Q	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																																																																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.											.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		A	A	P	V	R	P	G	Q	L	D	R	A	N	A	A	Y	V	L	E	T	L	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	Q	G	C	L	D	G	H	F	A	G	X	I	T	A	P	V	.	.	H	K	G	V	I	N	E	A	G	I	P	F	S	G	H	T
Template Known Secondary structure		S	S			B	T	T	B			G	G	G											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	S		S								.	.								T	T				S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.																						.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120			.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.
			527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.				.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.		580	.	.	.		.	.	.	.	.	.	590	.					.	.	.	.	.
Predicted Secondary structure		.																										.	.	.																													.					.									.	.	.	.
Query SS confidence		.																										.	.	.																													.					.									.	.	.	.
Query Sequence		.	L	I	K	T	A	P	G	S	S	L	V	S	S	V	F	F	M	L	L	P	E	Q	V	Y	V	.	.	.	Y	G	D	C	A	I	N	P	D	P	T	A	E	Q	L	A	E	I	A	I	Q	S	A	D	S	A	A	A	.	F	G	I	E	.	P	R	V	A	M	L	S	Y	.	.	.	.	S	T	G	T	S
Query Conservation		.																										.	.	.																													.					.									.	.	.	.
Alig confidence		.																										.	.	.																													.					.									.	.	.	.
Template Conservation
Template Sequence		E	F	L	A	D	L	T	H	T	A	Q	V	V	X	X	L	A	T	R	G	L	R	V	A	L	A	T	T	H	L	P	L	R	E	V	A	D	A	I	S	D	E	R	L	T	R	V	A	R	I	L	H	A	D	L	R	D	K	F	G	I	A	H	P	R	I	L	V	C	G	L	N	P	H	A	G	E	G	G	H
Template Known Secondary structure								T	T		S									T	T						S	S		S	S																												T	S			S	S								S	S	G	G	G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		1137	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	G	S	D	V	E	K	V	R	E	A	T	R	L	A	Q	E	K	R	P	D	L	M	I	D	G	P	L	Q	Y	D	A	A	V	M	A	D	V	A	K	S	K	A	P	N	S	P	V	A	G	R	A	T	V	F	I	F	P	D	L	N	T	G	N	T	T	Y	K	A	V	Q	R	S	A	D	L	I	S	I
Query Conservation
Alig confidence																					.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	R	E	E	I	E	V	I	E	P	C	L	E	R	L	R	G	E	.	.	G	L	D	L	I	G	P	L	P	A	D	T	L	F	T	P	K	H	.	.	.	.	.	.	.	.	.	.	L	E	H	C	D	A	V	L	A	X	Y	H	D	Q	G	L	P	V	L	K	Y	K	G	F	G	A	A	V	N	V	T
Template Known Secondary structure		S		S					T											T	.	.	T													S	S				.	.	.	.	.	.	.	.	.	.		T	T		S					S	S												T	T	T
Template Predicted Secondary structure																					.	.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1217	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.			.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.											.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.													.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	M	L	Q	G	M	R	K	P	V	N	D	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	G	A	L	V	D	D	I	V	Y	T	I	A	L	T	A	I	Q	S	A	Q	Q
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.			.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.			.	.
Template Sequence		L	.	.	.	.	G	L	.	.	P	I	I	R	T	S	V	D	H	G	T	A	L	D	L	A	G	S	G	R	I	D	S	G	S	L	Q	V	A	L	E	T	A	Y	Q	X	A	A	S	R
Template Known Secondary structure			.	.	.	.	T	S	.	.	S	S						S	S				G	G	G	T	T	S
Template Predicted Secondary structure			.	.	.	.			.	.
Template SS confidence
		1285					.	.			.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions