Job Description P69380 Confidence 6.49% Date Thu Jan 5 12:11:26 GMT 2012 Rank 62 Aligned Residues 83 % Identity 13% Template c2zkqc_ PDB info PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	I	I	D	I	V	T	S	W	P	G	V	S	G	A	H	D	L	R	T	R	Q	S	G	P	T	R	F	I	Q	I	H	L	E	M	E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D	P	C	S	V	V	P	R	E	G	K
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		A	E	L	N	E	F	L	T	R	E	L	A	E	D	G	Y	S	G	V	E	V	R	V	T	P	T	R	T	E	I	I	I	L	A	.	T	R	T	Q	N	V	L	G	E	K	G	R	R	I	R	E	L	T	A	V	V	Q	K	R	F	G	F	P	E	G	S	V	E	L	Y	A	E	K	V	A	T	R	G	L	C
Template Known Secondary structure												T		T	T	T							B			T	T									.	S								G	G	G														S		T	T	T											S		G	G	G
Template Predicted Secondary structure																																				.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		296	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions