Job Description P69380 Confidence 5.29% Date Thu Jan 5 12:11:26 GMT 2012 Rank 93 Aligned Residues 170 % Identity 14% Template c2vv5D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Resolution 3.45 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	I	V	T	I	V	A	L	I	C	T	I	I	L	V	S	F	Q	R	W	V	V	R	R	T	Q	S	Q	A	V	R	A	D	M	L	H	Y	Q	S	D	V	M	M	N	G	A	I	L	L	A	L	G	L	S	W	Y	G	W	H	R	A	D	A	L	F	A	L	G	I	G	I	Y	I	L	Y	S	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	L	A	I	I	I	V	G	L	I	I	A	R	M	I	S	N	A	V	N	R	L	M	I	S	R	K	I	D	A	T	V	A	D	F	L	S	A	L	V	R	Y	G	I	I	A	F	T	L	I	A	A	L	G	R	V	G	V	Q	T	A	S	V	I	A	V	L	G	A	A	G	L	V	V	G	L	A	L	Q
Template Known Secondary structure																														S																											T	T	T			S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230																									.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	M	G	Y	E	A	V	Q	S	L	L	D	R	A	L	P	D	E	E	R	Q	E	I	I	D	I	V	T	S	W	P	G	V	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	D	L	R	T	R	Q	S	G	P	T	R	F	I	Q	I	H	L	E	M
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	L	S	N	L	A	A	G	V	L	L	V	M	F	R	P	F	R	A	G	E	Y	V	D	L	G	G	V	A	G	T	V	L	S	V	Q	I	F	S	T	T	M	R	T	A	D	G	K	I	I	V	I	P	N	G	K	I	I	A	G	N	I	I	N	F	S	R	E	P	V	R	R	N	E	F	I	I	G	V
Template Known Secondary structure															T	T		S	S		T	T					S	S	S										S	S							T	T	S												T	S					S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	D	S	D	I	D	Q	V	K	Q	I	L	T	N	I	I	Q	S	E	D	R	I	L	K	D	R	E	M	T	V	R	L	N
Template Known Secondary structure			T	T	S																	T	T	B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions