Job Description P39370 Confidence 97.02% Date Thu Jan 5 12:00:04 GMT 2012 Rank 5 Aligned Residues 182 % Identity 10% Template c2o14A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		A	T	N	H	Q	T	Q	Y	G	T	V	G	Q	A	L	H	I	A	R	K	L	L	P	F	I	P	D	N	A	G	I	L	I	V	P	C	C	R	G	G	S	A	F	T	A	G	S	E	G	T	Y	S	E	R	H	G	A	S	H	D	A	C	R	W	G	T	D	T	P	L	Y	Q	D	L	V	S	.	.	R	T
Query Conservation																																																																														.	.
Alig confidence																												.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																												.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	V	C	N	Y	Y	P	L	N	S	S	K	Q	A	G	W	G	Q	X	L	P	H	Y	I	D	.	K	H	T	F	Q	V	R	N	X	A	S	G	G	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	G	F	R	N	D	G	Q	L
Template Known Secondary structure		T	T	T	S			S	S	T	T	T		S	B							G	G	G	T	S		.	T	T	T									T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																												.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																													.	.	.	.	.	.	.	.	220	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		R	A	A	L	A	K	N	P	Q	N	K	F	L	G	A	C	W	M	Q	G	E	F	D	.	.	.	L	M	T	S	D	Y	A	S	H	P	Q	H	F	N	H	M	V	E	A	F	R	R	D	L	K	Q	Y	H	S	Q	L	N	N	I	T	D	A	P	W	F	C	G	D	T	T	W	Y	W	K	E	N	F	P	H
Query Conservation																									.	.	.
Alig confidence														.	.										.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	I	L	K	Y	I	K	P	G	D	Y	.	.	F	X	L	Q	L	G	I	N	D	T	N	P	K	H	K	E	S	E	A	E	F	K	E	V	X	R	D	X	I	R	Q	V	K	A	.	.	.	.	.	.	.	.	.	.	.	K	G	A	D	V	I	L	S	T	P	Q	G	R	A	T	D	F	T	S	E	G
Template Known Secondary structure						T	T			T	T			.	.							T	G	G	G		G	G	G																				T	.	.	.	.	.	.	.	.	.	.	.	T	T												T	T		B		T	T	S
Template Predicted Secondary structure														.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.												.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		S	Y	E	A	I	Y	G	N	Y	Q	.	.	.	.	.	N	N	V	L	A	N	I	I	F	V	D	F	Q	Q	Q	G	E	R	G	L	T	N	A	P	D	E	D	P	D	D	L	S	T	G	Y	Y	G	S	A	Y	R	S	P	E	N	W	T	T	A	L	R	S	S	H	F	S	T	A	A	R	R	G	I	I	S
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		I	H	S	S	V	N	R	W	Y	R	A	S	I	L	A	L	A	E	E	E	K	T	Y	L	I	D	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	S	S	A	Y	F	T	S	I	G	P	E	R	T	L	G	L	Y	X	D	G	D	T	L	H	P	N	R	A	G	A	D	.	A	L	A
Template Known Secondary structure			B			T	T	S	T	T											T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	B		T	T		S	S	S	B	B						.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.
		313	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	F	V	E	A	I	L	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	A	V	Q	E	L	K	R	Q
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions