Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	P	L	L	T	D	S	R	R	Q	A	L	R	S	A	S	H	W	Y	A	V	L	S	G	E	R	V	S	P	Q	Q	E	A	R	W	Q	Q	W	Y	E	Q	D	Q	D	N	Q	W	A	W	Q	Q	V	E	N	L	R	N	Q	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																			?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	G	V	P	G	D	V	A	S	R	A	L	H	D	T	R	L	T	R	R	H	V	M	K	G	L	L	L	L	L	G	A	G	G	G	W	Q	L	W	Q	S	E	T	G	E	G	L	R	A	D	Y	R	T	A	K	G	T	V	S	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?																						?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	Q	L	E	D	G	S	L	L	T	L	N	T	Q	S	A	A	D	V	R	F	D	A	H	Q	R	T	V	R	L	W	Y	G	E	I	A	I	T	T	A	K	D	A	L	Q	R	P	F	R	V	L	T	R	Q	G	Q	L	T	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	T	E	F	T	V	R	Q	Q	D	N	F	T	Q	L	D	V	Q	Q	H	A	V	E	V	L	L	A	S	A	P	A	Q	K	R	I	V	N	A	G	E	S	L	Q	F	S	A	S	E	F	G	A	V	K	P	L	D	D	E	S	T
Secondary structure
SS confidence
Disorder																											?	?		?	?	?	?	?												?		?	?	?	?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	W	T	K	D	I	L	S	F	S	D	K	P	L	G	E	V	I	A	T	L	T	R	Y	R	N	G	V	L	R	C	D	P	A	V	A	G	L	R	L	S	G	T	F	P	L	K	N	T	D	A	I	L	N	V	I	A	Q	T	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Sequence		P	V	K	I	Q	S	I	T	R	Y	W	I	N	I	S	P	L
Secondary structure
SS confidence
Disorder																		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2y9k chain G Region: 247 - 316 Aligned: 69 Modelled: 70 Confidence: 98.2% Identity: 14% PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution Phyre2 PDB 3gr5 chain A Region: 246 - 316 Aligned: 69 Modelled: 71 Confidence: 97.9% Identity: 9% PDB header:membrane protein Chain: A: PDB Molecule:escc; PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec) Phyre2 PDB 2y3m chain A Region: 246 - 316 Aligned: 64 Modelled: 71 Confidence: 96.2% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:protein transport protein hofq; PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans Phyre2 PDB 2a02 chain A Region: 246 - 316 Aligned: 71 Modelled: 71 Confidence: 96.1% Identity: 14% PDB header:membrane protein, metal transport Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida. Phyre2 PDB 3ezj chain A Region: 247 - 316 Aligned: 70 Modelled: 70 Confidence: 96.1% Identity: 10% PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody Phyre2 PDB 3hug chain J Region: 18 - 68 Aligned: 51 Modelled: 51 Confidence: 95.7% Identity: 12% PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl Phyre2 PDB 3oss chain D Region: 247 - 311 Aligned: 64 Modelled: 65 Confidence: 95.4% Identity: 17% PDB header:protein transport Chain: D: PDB Molecule:type 2 secretion system, secretin gspd; PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system Phyre2 PDB 2d1u chain A Region: 246 - 316 Aligned: 71 Modelled: 71 Confidence: 94.9% Identity: 10% PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli Phyre2 PDB 1zzv chain A Region: 246 - 317 Aligned: 72 Modelled: 72 Confidence: 94.8% Identity: 10% PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli. Phyre2 PDB 3eo6 chain B Region: 109 - 188 Aligned: 77 Modelled: 80 Confidence: 86.1% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution Phyre2 PDB 3cdd chain D Region: 248 - 316 Aligned: 69 Modelled: 69 Confidence: 85.2% Identity: 14% PDB header:structural protein Chain: D: PDB Molecule:prophage muso2, 43 kda tail protein; PDBTitle: crystal structure of prophage muso2, 43 kda tail protein from2 shewanella oneidensis Phyre2 PDB 3hqx chain A Region: 109 - 191 Aligned: 80 Modelled: 83 Confidence: 85.1% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 Phyre2 PDB 3cdd chain A domain 2 Region: 248 - 315 Aligned: 68 Modelled: 68 Confidence: 79.1% Identity: 15% Fold: Phage tail proteins Superfamily: Phage tail proteins Family: Baseplate protein-like Phyre2 PDB 2z2s chain D Region: 18 - 70 Aligned: 53 Modelled: 53 Confidence: 78.7% Identity: 8% PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr Phyre2 PDB 1uik chain A domain 1 Region: 127 - 198 Aligned: 72 Modelled: 72 Confidence: 74.2% Identity: 11% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1uij chain A domain 1 Region: 127 - 198 Aligned: 72 Modelled: 72 Confidence: 71.0% Identity: 8% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 2eaa chain B Region: 128 - 198 Aligned: 71 Modelled: 71 Confidence: 65.8% Identity: 11% PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 Phyre2 PDB 3s7e chain B Region: 102 - 198 Aligned: 97 Modelled: 97 Confidence: 64.5% Identity: 12% PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 Phyre2 PDB 2bnm chain A domain 2 Region: 189 - 227 Aligned: 39 Modelled: 39 Confidence: 62.8% Identity: 10% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: TM1459-like Phyre2 PDB 2pfw chain B Region: 128 - 199 Aligned: 68 Modelled: 72 Confidence: 61.2% Identity: 7% PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution Phyre2 1 c2y9kG_ 2 c3gr5A_ 3 c2y3mA_ 4 c2a02A_ 5 c3ezjA_ 6 c3hugJ_ 7 c3ossD_ 8 c2d1uA_ 9 c1zzvA_ 10 c3eo6B_ 11 c3cddD_ 12 c3hqxA_ 13 d3cdda2 14 c2z2sD_ 15 d1uika1 16 d1uija1 17 c2eaaB_ 18 c3s7eB_ 19 d2bnma2 20 c2pfwB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2y9kG_ 98.2 14 PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution 2 c3gr5A_ 97.9 9 PDB header:membrane protein Chain: A: PDB Molecule:escc; PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec) 3 c2y3mA_ 96.2 14 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein hofq; PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans 4 c2a02A_ 96.1 14 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida. 5 c3ezjA_ 96.1 10 PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody 6 c3hugJ_ 95.7 12 PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 7 c3ossD_ 95.4 17 PDB header:protein transport Chain: D: PDB Molecule:type 2 secretion system, secretin gspd; PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system 8 c2d1uA_ 94.9 10 PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli 9 c1zzvA_ 94.8 10 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli. 10 c3eo6B_ 86.1 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 11 c3cddD_ 85.2 14 PDB header:structural protein Chain: D: PDB Molecule:prophage muso2, 43 kda tail protein; PDBTitle: crystal structure of prophage muso2, 43 kda tail protein from2 shewanella oneidensis 12 c3hqxA_ 85.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 13 d3cdda2 79.1 15 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 14 c2z2sD_ 78.7 8 PDB header:transcription Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr 15 d1uika1 74.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 16 d1uija1 71.0 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 17 c2eaaB_ 65.8 11 PDB header:plant protein Chain: B: PDB Molecule:7s globulin-3; PDBTitle: crystal structure of adzuki bean 7s globulin-3 18 c3s7eB_ 64.5 12 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 19 d2bnma2 62.8 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 20 c2pfwB_ 61.2 7 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 21 c2cauA_ not modelled 56.9 10 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 22 d1yhfa1 not modelled 56.1 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 23 d1dgwa_ not modelled 56.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 24 c2iahA_ not modelled 54.7 14 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 25 d1fxza2 not modelled 51.7 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 26 c2bnoA_ not modelled 50.5 10 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 27 c1uijA_ not modelled 46.9 8 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 28 d2oyza1 not modelled 45.1 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 29 d1tkea1 not modelled 45.1 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 30 c2vz1A_ not modelled 42.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:galactose oxidase; PDBTitle: premat-galactose oxidase 31 c3es4B_ not modelled 40.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold; PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution 32 c1wwtA_ not modelled 38.4 15 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 33 d1dw0a_ not modelled 38.0 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 34 d1yfua1 not modelled 36.7 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 35 d1y9qa2 not modelled 36.3 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 36 d2j73a1 not modelled 36.2 11 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:PUD-like 37 c2ozjB_ not modelled 34.8 12 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 38 c3myxA_ not modelled 32.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pspto_0244; PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution 39 c3kscD_ not modelled 30.7 13 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 40 d1j58a_ not modelled 30.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 41 d2phla1 not modelled 30.3 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 42 d1j1la_ not modelled 30.2 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 43 c3d37A_ not modelled 30.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tail protein, 43 kda; PDBTitle: the crystal structure of the tail protein from neisseria meningitidis2 mc58 44 c3bcwB_ not modelled 29.6 9 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 45 d1gu2a_ not modelled 28.7 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 46 d1v8qa_ not modelled 26.2 20 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 47 d1o5ua_ not modelled 25.9 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 48 d1od5a2 not modelled 25.8 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 49 c1wruA_ not modelled 25.6 13 PDB header:structural protein Chain: A: PDB Molecule:43 kda tail protein; PDBTitle: structure of central hub elucidated by x-ray analysis of gene product2 44; baseplate component of bacteriophage mu 50 d2pyta1 not modelled 25.2 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 51 d1wxma1 not modelled 25.1 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 52 c3o5cA_ not modelled 22.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis 53 d1nyra2 not modelled 22.6 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 54 d1wrua2 not modelled 21.8 13 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 55 c1fxzC_ not modelled 21.7 10 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 56 c3kglB_ not modelled 21.7 15 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 57 d1od5a1 not modelled 21.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 58 c2oziA_ not modelled 21.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 59 c2gu9B_ not modelled 21.3 6 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 60 d1vj2a_ not modelled 21.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 61 c3ehkC_ not modelled 21.2 8 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 62 d2oa4a1 not modelled 20.5 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 63 c3hq7A_ not modelled 19.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant 64 c2c1uB_ not modelled 19.7 15 PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form 65 c3qacA_ not modelled 19.7 10 PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l. 66 c3c3vA_ not modelled 19.5 10 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 67 c3rnsA_ not modelled 19.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis 68 d2f4pa1 not modelled 18.8 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 69 c2e9qA_ not modelled 18.7 8 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 70 c2vecA_ not modelled 18.7 10 PDB header:cytosolic protein Chain: A: PDB Molecule:pirin-like protein yhak; PDBTitle: the crystal structure of the protein yhak from escherichia2 coli 71 c2d5fB_ not modelled 18.6 14 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 72 d1eb7a2 not modelled 18.0 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 73 c3pdkB_ not modelled 17.9 20 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis 74 d1mpga2 not modelled 16.9 10 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:DNA repair glycosylase, N-terminal domain 75 c2i45C_ not modelled 16.4 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 76 d2p5zx2 not modelled 16.3 7 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 77 c1nmlA_ not modelled 15.9 8 PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0) 78 d1fxza1 not modelled 15.9 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 79 c2jrtA_ not modelled 15.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 80 c1y9qA_ not modelled 15.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 81 d1dlja3 not modelled 15.1 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 82 c3fjsC_ not modelled 14.9 16 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 83 d1nmla2 not modelled 14.9 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 84 c3ht2A_ not modelled 14.8 11 PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus 85 c3fin0_ not modelled 14.3 20 PDB header:ribosome Chain: 0: PDB Molecule:50s ribosomal protein l27; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit. 86 c3i4oA_ not modelled 13.9 9 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 87 d1iqca2 not modelled 13.5 10 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 88 c1cauB_ not modelled 13.3 8 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 89 d1pmia_ not modelled 13.3 6 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 90 c2qjvB_ not modelled 13.2 16 PDB header:isomerase Chain: B: PDB Molecule:uncharacterized iolb-like protein; PDBTitle: crystal structure of an iolb-like protein (stm4420) from salmonella2 typhimurium lt2 at 1.90 a resolution 91 d2bsya1 not modelled 12.8 8 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 92 d2zjrt1 not modelled 12.7 18 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:Ribosomal L27 protein 93 c1or7C_ not modelled 12.3 14 PDB header:transcription Chain: C: PDB Molecule:sigma-e factor negative regulatory protein; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea 94 d1or7c_ not modelled 12.3 14 Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA 95 c2opkC_ not modelled 12.2 17 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 96 c2vhdB_ not modelled 11.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form 97 d1ekxa1 not modelled 11.9 14 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 98 d1ml4a1 not modelled 11.1 19 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 99 d1otha1 not modelled 10.9 19 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0