Job Description P23485 Confidence 96.10% Date Thu Jan 5 11:39:31 GMT 2012 Rank 5 Aligned Residues 70 % Identity 10% Template c3ezjA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	F	S	D	K	P	L	G	E	V	I	A	T	L	T	R	Y	R	N	G	V	L	R	C	D	P	A	V	A	G	L	R	L	S	G	T	F	P	L	K	N	T	D	A	I	L	N	V	I	A	Q	T	L	P	V	K	I	Q	S	I	T	R	Y	W	I	N	I	S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	F	K	D	T	D	L	K	S	F	I	E	T	V	G	A	N	L	N	K	T	I	I	M	V	Q	G	A	V	S	I	R	T	M	T	P	L	N	E	R	Q	Y	Y	Q	L	F	L	N	L	L	E	A	Q	G	Y	A	V	V	P	M	E	N	D	V	L	K	V	V	K
Template Known Secondary structure																					T															S	S		B																T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions