 |
Job Description | P33226 | Confidence | 95.80% | Date | Thu Jan 5 11:51:25 GMT 2012 |
Rank | 48 | Aligned Residues | 83 |
% Identity | 24% | Template | d2gc4d1 |
SCOP info | Cytochrome c
| Cytochrome c
| monodomain cytochrome c
|
Resolution | 1.90 |
|
 |
  |   |
308 | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 360 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | D | M | V | N | D | I | K | P | I | W | A | Y | A | D | S | L | Y | N | G | T | C | N | Q | C | H | G | A | P | E | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | H | F | D | A | N | G | W | I | G | T | L | N | G | M | I | G | F | . |
. |
. |
. |
. |
T | S | L | D | K | R | E | E | R | T |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |   | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |
|   |
|   |   |
|   |   |
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|   |   |
Template Sequence |   |
E | N | V | Y | N | E | D | P | E | I | L | P | E | A | E | E | L | Y | A | G | M | C | S | G | C | H | G | H | Y | A | E | G | K | I | G | P | G | L | N | D | A | Y | W | T | Y | P | G | N | E | T | D | V | G | L | F | S | T | L | Y | G | G | A | T | G | Q | M | G | P | M | W | G | S | L | T | L | D | E | M | L | R |
Template Known Secondary structure |   |
|
| T | T | T | T |
| T | T | T |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |
| T | T | S | S |
| S | S | S |
|
|
| S | S | S |
|
| S | S | G | G | G | G | S |  |  |  |  |  |  |  |  |  |  |
|
| S | T | T |
|
|
|
| T | T | T | S |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
  |
  |   |
367 | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | K | Y | L | Q | M | N | A | S | D | T | A | G | K | A | H | G | D | K | K | E | E | K |
Query Conservation |   |
  |   |   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | M | A | W | V | R | H | L | Y | T | G | D | P | K | D | A | S | W | L | T | D | E | Q | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
|
| S |
| G | G | G |
| T | T | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
116 | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|