 |
Job Description | P33226 | Confidence | 92.97% | Date | Thu Jan 5 11:51:25 GMT 2012 |
Rank | 117 | Aligned Residues | 54 |
% Identity | 22% | Template | c3m97X_ |
PDB info |
PDB header:electron transport | Chain: X: PDB Molecule:cytochrome c-552; |
PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans
|
Resolution | 1.33 Å |
|
 |
  |   |
319 | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
Query Sequence |   |
A | Y | A | D | S | L | Y | N | G | T | C | N | Q | C | H | G | A | P | E | I | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | F | D | A | N | G | W | I | G | T | L | N | G | M | I | G | F | T | S | L | . |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |
| . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |
|   |   |
|
|   | . |   |
|   |   |
|
|   |   |   |
|   |
|   |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
Template Sequence |   |
A | A | G | E | K | V | F | G | . |
K | C | K | A | C | H | K | L | D | G | N | D | G | V | G | P | H | L | N | G | V | V | G | R | T | V | A | G | V | D | G | F | N | Y | S | D | P | M | K | A | H | G | G | D | W | T | P | E | A | L | Q | E | F | L | T | N | P | K | A | V | V | K | G | T | K | M | A | F | A | G | L |
Template Known Secondary structure |   |
 |  |  |  |  |  | G | G | . | G | T | T | T | T |
|
| S | S | S |
|
| S | S | S |
|
|
| T | T |
| T | T |
| B | T | T |
| S | T | T |
|
|
|
|  |  |  |  |  |  |
| S | B |
|
|  |  |  |  |  |  |  |  |  |
|  |  |  |  | S | T | T |
| S |
|
|
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
45 | . | . | . | . | 50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
  |   |
|
360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . |
Predicted Secondary structure |   |
. |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
D | K | R | E | E | R | T | L | L | K | Y | L | Q | M |
Query Conservation |   |
. |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|   |
|
|
|
|
|
|   |
|
Template Sequence |   |
P | K | I | E | D | R | A | N | L | I | A | Y | L | E | G |
Template Known Secondary structure |   |
| S |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|