Job Description P0AEM9 Confidence 96.48% Date Thu Jan 5 11:23:44 GMT 2012 Rank 48 Aligned Residues 212 % Identity 13% Template c3ix1A_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		T	L	L	V	G	L	E	G	T	Y	P	P	F	S	F	Q	G	D	D	G	K	L	T	G	F	E	V	E	F	A	Q	Q	L	A	K	H	L	G	V	E	A	S	L	K	P	T	.	K	W	D	G	M	L	A	S	L	D	S	K	R	I	D	V	V	I	N	Q	V	T	I	S	D	E	R	K	K	K	Y	D	F
Query Conservation																																																.
Alig confidence								.	.					.	.	.	.	.	.																													.
Template Conservation								.	.					.	.	.	.	.	.
Template Sequence		T	V	E	V	M	L	.	.	D	W	Y	P	.	.	.	.	.	.	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K	D	L	P
Template Known Secondary structure								.	.	S	S	S		.	.	.	.	.	.		G	G	G									T	T					T	T									S	S	T	T									T	S		S															T	T
Template Predicted Secondary structure								.	.					.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.			.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		121	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure							.	.																																		.	.	.	.	.
Query SS confidence							.	.																																		.	.	.	.	.
Query Sequence		S	T	P	Y	T	.	.	I	S	G	I	Q	A	L	V	K	K	G	N	E	G	T	I	K	T	A	D	D	L	K	G	K	K	V	G	V	G	L	G	T	.	.	.	.	.	N	Y	E	E	W	L	R	Q	N	V	Q	G	V	D	V	R	T	Y	D	D	D	P	T	K	Y	Q	D	L	R	V	G	R	I	D	A
Query Conservation							.	.																																		.	.	.	.	.
Alig confidence							.	.																																		.	.	.	.	.
Template Conservation
Template Sequence		V	V	S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	E	L	G	A	S	I	V	S	G	R	A	D	A
Template Known Secondary structure											S									G	G	G			S	S	G	G	G	G	T	T	S						S		T	T												T	T			G	G	G							T	T									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		194	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.					.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																													.	.	.	.							.	.	.	.				.	.	.	.																.
Query SS confidence						.																													.	.	.	.							.	.	.	.				.	.	.	.																.
Query Sequence		I	L	V	D	.	R	L	A	A	L	D	L	V	K	K	T	N	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	G	.	.	.	.	V	A	L	R	K	G	.	.	.	.	N	E	D	.	.	.	.	L	L	K	A	V	N	D	A	I	A	E	M	Q	K	D	.	G	T	L	Q	A	L	S	E	K	W
Query Conservation						.																													.	.	.	.							.	.	.	.				.	.	.	.																.
Alig confidence						.																													.	.	.	.							.	.	.	.				.	.	.	.																.
Template Conservation
Template Sequence		V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K	G	Y	E	W	M	V	E	N	P	D	E	A	L	N	V	L	L	T	N
Template Known Secondary structure							T	T	T								T	T								G	G	G	T	T						S																																		S											T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		264	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions