Job Description P0AEM9 Confidence 100.00% Date Thu Jan 5 11:23:44 GMT 2012 Rank 11 Aligned Residues 215 % Identity 28% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	V	G	L	E	G	T	Y	P	P	F	S	F	Q	G	D	D	G	K	L	T	G	F	E	V	E	F	A	Q	Q	L	A	K	H	L	G	V	E	A	S	L	K	P	T	K	W	D	G	M	L	A	S	L	D	S	K	R	I	D	V	V	I	N	Q	V	T	I	S	D	E	R	K	K	K	Y	D	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	R	M	G	T	E	G	A	Y	P	P	Y	N	F	I	N	D	A	G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	R	D	E	V	I	D	F	T
Template Known Secondary structure									S			T	T	T					T	T	S				S														T										G	G	G							T	T	S		S				S	S		B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	Y	T	I	S	G	I	Q	A	L	V	K	K	G	N	E	G	T	I	K	T	A	D	D	L	K	G	K	K	V	G	V	G	L	G	T	N	Y	E	E	W	L	R	Q	N	V	Q	G	V	D	V	R	T	Y	D	D	D	P	T	K	Y	Q	D	L	R	V	G	R	I	D	A	I	L	V	D	R	L	A	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.																				.	.
Template Conservation																					.	.	.	.	.	.	.																				.	.
Template Sequence		Q	N	Y	I	P	P	T	A	S	S	Y	V	A	T	S	D	G	A	D	.	.	.	.	.	.	.	L	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	.	.	S	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A	D	A	V	F	A	D	R	D	Y	L
Template Known Secondary structure															S	S	T	T			.	.	.	.	.	.	.	T	T	S						T	T	S									.	.	S	S	S						S	S										T	T	S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.																				.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		202	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		L	D	L	V	K	K	T	N	.	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	G	V	A	L	R	K	G	N	E	D	L	L	K	A	V	N	D	A	I	A	E	M	Q	K	D	G	T	L	Q	A	L	S	E	K	W	F	G	A	D	V	T
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		V	P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L	N	T	M	I	K	K	W	F	G	E	D	A	A
Template Known Secondary structure								T	T	T	S	S										S	S								T	T																		T	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions