Job Description P0AEM9 Confidence 78.78% Date Thu Jan 5 11:23:44 GMT 2012 Rank 69 Aligned Residues 193 % Identity 7% Template c3fd3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein; PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58. Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	T	L	L	V	G	L	E	G	T	Y	P	P	F	S	F	Q	G	D	D	G	K	L	T	G	F	E	V	E	F	A	Q	Q	L	A	K	H	L	G	V	E	A	S	L	K	P	T	K	W	D	G	M	L	A	S	L	D	S	K	R	I	D	V	V	I	N	Q	V	T	I	S	D	E	R	K	K	K	Y	D
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	T	L	N	I	A	T	N	A	D	S	L	.	.	.	.	.	.	.	.	.	.	.	G	T	W	F	L	D	A	V	S	K	F	T	G	G	S	D	Y	L	V	N	I	A	V	D	D	Q	D	H	T	V	E	W	L	R	G	G	R	V	L	A	A	V	T	A	H	D	K	P	V	Q	G	C	R	V	T	P
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	T	T	T											T	S	S										S	S								T	T	S		S					S			S			T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.												.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.
Query SS confidence																																								.	.	.	.	.
Query Sequence		F	S	T	P	Y	T	I	S	G	I	Q	A	L	V	K	K	G	N	E	G	T	I	K	T	A	D	D	L	K	G	K	K	V	G	V	G	L	G	.	.	.	.	.	T	N	Y	E	E	W	L	R	Q	N	V	Q	G	V	D	V	R	T	Y	D	D	D	P	T	K	Y	Q	D	L	R	V	G	R	I	D	A	I
Query Conservation																																								.	.	.	.	.
Alig confidence																																								.	.	.	.	.
Template Conservation
Template Sequence		L	G	V	L	R	Y	H	A	T	A	S	P	D	F	X	A	R	H	F	A	D	G	V	T	P	A	A	L	A	R	A	P	G	L	T	F	N	Q	K	D	R	L	Q	A	S	W	I	R	T	A	L	G	E	D	V	S	Y	P	T	H	W	L	P	S	T	D	G	F	V	K	A	S	L	A	G	X	G	W	G	L
Template Known Secondary structure																					T	T		S						T	T	S					S	S	T	T													S	S																					T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	D	R	L	A	A	L	D	L	V	K	K	T	N	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	G	V	A	L	R	K	G	N	E	D	L	L	K	A	V	N	D	A	I	A	E
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		N	P	V	Q	L	V	A	E	H	L	A	A	G	.	.	R	L	V	E	L	X	P	G	T	P	L	D	I	P	L	Y	W	Q	V	N	R	L	A	A	E	R	L	A	G	L	T	A	N	X	V	G
Template Known Secondary structure														T	.	.	S	S			S	S	T	T													T	T	T	T	T	T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions