Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEM9
Confidence100.00%DateThu Jan 5 11:23:44 GMT 2012
Rank1Aligned Residues233
% Identity35%Templatec2ylnA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation
Resolution1.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
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Query Sequence  DEGLLNKVKERGTLLVGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRIDVVINQVT
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Template Sequence  SGSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVG
Template Known Secondary structure  T

T

STTT
TTS
ST


GGGTS
S
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   38.40.........50.........60.........70.........80.........90.........100.........110.......
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  ISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTADDLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDPTKYQDLRVG
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Template Sequence  LTSPERQATFDKSEPYSWSGAVLVAHNDSN. IKSIADIKGVKTAQSLTSNYGEKAKA. . AGAQLVPVDGLAQSLTLIEQK
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S
S
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TT
S.

SGGG
TTS
TTS..TT

SSTT
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   118.120.........130.........140....... ..150.........160.........170... ......180.........190....
 
   190.........200......... 210.........220.........230.........240.........250.........260.....
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Query Sequence  RIDAILVDRLAALDLVKKTN. . . DTLAVTGEAFSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVT
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Template Conservation 


  
                                  
  
    
   

  
  
   
    
  

 
 
 
Template Sequence  RADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDIS
Template Known Secondary structure  S

STTSS

GGG


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   195....200.........210.........220.........230.........240.........250.........260.........270...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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