Job Description P0AEM9 Confidence 81.49% Date Thu Jan 5 11:23:44 GMT 2012 Rank 68 Aligned Residues 176 % Identity 18% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		F	E	V	E	F	A	Q	Q	L	A	K	H	L	G	V	E	A	S	L	K	P	T	K	W	D	G	M	L	A	S	L	D	S	K	R	I	D	V	V	I	N	Q	V	T	I	S	D	E	R	K	K	K	Y	D	F	S	T	P	Y	T	I	S	G	I	Q	A	L	V	K	K	G	N	E	G	T	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																																																													.	.	.	.	.
Template Conservation
Template Sequence		A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G
Template Known Secondary structure														T	T														T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
						141	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.											180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	I	K	T	A	D	D	L	.	.	.	.	.	.	.	K	G	K	K	V	G	V	G	L	G	T	N	Y	E	E	W	L	R	Q	N	V	Q	G	V	D	V	R	T	Y	D	D	D	.	.	.	.	.	.	.	.	.	.	P	T	K	Y	Q	D	L	R	V	G	R	I	D	A	I	L	V	D	R	L
Query Conservation		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S	S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P
Template Known Secondary structure					T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T																			T	T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure												.	.	.																							.	.	.	.
Query SS confidence												.	.	.																							.	.	.	.
Query Sequence		A	A	L	D	L	V	K	K	T	N	.	.	.	D	T	L	A	V	T	G	E	A	F	S	R	Q	E	S	G	V	A	L	R	K	G	.	.	.	.	N	E	D	L	L	K	A	V	N	D
Query Conservation												.	.	.																							.	.	.	.
Alig confidence												.	.	.																							.	.	.	.
Template Conservation
Template Sequence		H	P	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N
Template Known Secondary structure		S	G	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions